Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01428 ATGGCAGCAGCTATAGATATATACAGTAGCAGCAGACTTGCATTCTCAGATCCCTGTAGCGGGGAGCTCATGGAAGCACTGGAACCTTTTATCAAAGGTGCTTCTTTTAGCTCTGCAACCCCTTCTCCCTCTTCCTCATCCCTTTCTTCTTCTCCTTCCCCTTCTTCTCCTTGTCCCTCTCTTTCTCCCTCTCTTTCTCCTTGCTCTTTCTCTCCTTCAATCATTTCTTCACAGCCCGACCTTTACAACCCCGACTGTTGCTCAACCTCGACAACCCATATGTTTTCTCAAGGGTTCTCGAGCCATGACCTACTCGGTCTTGAGCAAACGGGTTCAATCGGGCTTAACCACCTTTCCCCAGTTCATATTCAACAGATTCAAGCCCAGATCCAGCTCCAGCAACAACAAAGACAACAGCAACACATGGCTGCCATGGCTGCAGCAGCTTCAATCCATAATCAGAAGCAAAGGCAATGGCAGCTGCAACATCAACAACAAAGCAACGTTAATTTCCTCAGCCCGAAAGCGATCCCCATGAAGCAAGTGGGTTCTCCAAAACCCACAAAGCTTTACAGAGGGGTGAGGCAACGGCATTGGGGGAAATGGGTTGCAGAGATCCGACTGCCTAAAAACCGTACTCGACTTTGGCTCGGCACCTTCGACACCGCCGAGGAGGCGGCTTTGGCTTACGATAAGGCCGCTTACAAGCTCCGGGGAGAGTTTGCGAGGTTGAATTTCCCGAATCTCCGGCACCAAGGCTCTCATGTCGGAGGGGAATTCGGCTGTTACAAGCCTCTCCATTCCTCCGTGGATGCGAAACTTCAAGCAATTTGTCAAAGCTTGGCTAGTTCGCAGAAACAGGGGAACCCGGGCAAACCCGTGTTCGTCTCCGATGCAAAGAAGACGATCGAGGAGAAAGCGGACCCGCCGCCGCCGGTGATGGTTGTTGAGAATTCATCCAAAAGCGAATTGTGTTTACTGGGATCAGAGGATTGTAAAGTGGAGAACTCGTCATCGCCTTCGTTGTCGGAGAGCGATGATTCTGCGGGTTCTTCGCCCGAGTCCGATATTAAGCTCCTGGATTTCACAGAGCCGCCATGGGATGAGTCGGAGAACTTTGTGTTGCGCAAGTATCCTTCATGGGAGATCGATTGGGAAGCCATACTTTCTTAG 1173 0.509 MAAAIDIYSSSRLAFSDPCSGELMEALEPFIKGASFSSATPSPSSSSLSSSPSPSSPCPSLSPSLSPCSFSPSIISSQPDLYNPDCCSTSTTHMFSQGFSSHDLLGLEQTGSIGLNHLSPVHIQQIQAQIQLQQQQRQQQHMAAMAAAASIHNQKQRQWQLQHQQQSNVNFLSPKAIPMKQVGSPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGEFARLNFPNLRHQGSHVGGEFGCYKPLHSSVDAKLQAICQSLASSQKQGNPGKPVFVSDAKKTIEEKADPPPPVMVVENSSKSELCLLGSEDCKVENSSSPSLSESDDSAGSSPESDIKLLDFTEPPWDESENFVLRKYPSWEIDWEAILS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01428 390 Gene3D AP2/ERF domain 190 248 IPR036955 GO:0003700|GO:0006355
Eupl03g01428 390 FunFam Ethylene-responsive transcription factor 2 189 248 - -
Eupl03g01428 390 Pfam AP2 domain 191 240 IPR001471 GO:0003700|GO:0006355
Eupl03g01428 390 PRINTS Ethylene responsive element binding protein signature 191 202 IPR001471 GO:0003700|GO:0006355
Eupl03g01428 390 PRINTS Ethylene responsive element binding protein signature 213 229 IPR001471 GO:0003700|GO:0006355
Eupl03g01428 390 SUPERFAMILY DNA-binding domain 190 248 IPR016177 GO:0003677
Eupl03g01428 390 ProSiteProfiles AP2/ERF domain profile. 190 247 IPR001471 GO:0003700|GO:0006355
Eupl03g01428 390 MobiDBLite consensus disorder prediction 39 55 - -
Eupl03g01428 390 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 388 - -
Eupl03g01428 390 MobiDBLite consensus disorder prediction 39 62 - -
Eupl03g01428 390 CDD AP2 189 249 IPR001471 GO:0003700|GO:0006355
Eupl03g01428 390 MobiDBLite consensus disorder prediction 332 352 - -
Eupl03g01428 390 SMART rav1_2 190 253 IPR001471 GO:0003700|GO:0006355
Eupl03g01428 390 MobiDBLite consensus disorder prediction 332 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01428 Eupl-Chr3 40429292 40431839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01428 1 390 AP2-EREBP Transcription Factor Family AT1G78080 46.929 9.65e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl03g01428 AP2 5.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01428 K09286 - nnu:104605948 425.631