Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g01415 ATGAGGGAAAATGGTTCCGTGCATAATAAAATGATTGATAGAAATTGGGTCATGAAGCGCAAACGGAAAAGACTTCCATGTGGACCAGATCTATCCAATGGTAAAGAAGGTATTTCTGTGCCTTCAGAATCTCCAAGGAGCAATCCTCCTGCTAAACGTAGACTGAAAAATGACATCAATTCGGCTCGATCTTCACGCAAGAAGAAAGGAAATGATGGGTACTACTTTGAATGTGTAATTTGTGATCTTGGAGGGAACTTGCTGTGTTGTGATAGCTGCCCTCGAACCTATCATCTCCAGTGCCTTAATCCACCTCTCAAGCGCACCCCTCCTGGGAAGTGGCAATGTTCAACCTGTTGTGAACAAAATGATGCTCTCAAGTCCATAAGCCAACCGGAGTCCATTTCAAGACGAGCAAGAACAAAGATTATTGCTGAAAAAACTAAGAATGAGATTAAGTCATCTGGCTCTGTCAAGGTATCACGGATCTTGGAAAGCTCCATTGCAGGAAAGAAAAGATCATCTAGTAAAGGAAAACCTGCCTTGTCTCGTACAGTTCCCTCTGTTGAAAAGAAGTCGGATTCCCCTCAAAAGCATGTGTCTTGTAGCACAAAGTCCAATCATTCATCACATGGTGGATCTGTCGAAGGTATTTCACCATGTGTCAATAGTGACATTGAGAAGAAACCCAATGTGTCTTGCACAGATGCAACTGGAGACAGGAAATCAAGCTCTCCCACTAAGGAAGTCCAATCTTCTGGTAGAACTTTAGACTTGGAACCAAGTGCTGAACACTCCGATAGGAAGTCTGACTTCCCATGTAATAATGGATCTCCAGGAAACAAGCAAAATCCCCCATTGGGTCATGCCACTAAGAAAGCCTGTAAAAGGAAGCAAAACATTAACAAGGAAGACCATCTGAAGAAGTCCAGGACCAATAAGGGAAAATCTGCTGTAAACACTTCTCGTAGGCGTGTATCCAAAGCAACTTCTGCATCTCCTGAAAGTAGTAAACCCCGCCAGAAACGTAATTCTGTTGACCACCTAATTTCTGTACGCCCACTGAAGGAGGATATTGGAACAAAATCTTTAGGCATTCAGCAAAAAGATGAGGGGTTCCCTGAGGAAACATCACACTCATCACATGATTTAGATGAACTAGGAGGTAAAGTAGATAAAACAATGACATGTGAAGGAAATGTTCCGGACGAAGTTCAACAGGTTGATCGGATTCTGGGGTGTCGAGTGCAATGTAGTGACACAATATCTTCACATATCAGTCAACCAAAGAGATTTTCAGCTTATCTCACACATGCTGCATCTGAGAATAACTCTACAAGGGTTGCAAGTGACCTGGCCTCTCAAGATTTACTCATTCCCGAAAATCACGATGGATTAGACAATCCTGCTGGAAATAGAGTTTTAGATGTGAAGGATGCTGATGTTCTCCTTGAAGATGGTTGTCATAGTGCTATGAACCAAATTGATATGGGAAAGAGTATTGAGAATGATATTAGAGGGGATAAAATACATCTCTACAGAAGATCTGTGGCCAAAGAATGTATAGAAAGGGATGCTATTGGTTCAACAGGGAGATTTTTAAAGTCTCAAGGTCTTACAGATGTGAATAGTGTAGTTCAAGGTGAATCTGTTGTAAATACAGATACGGTAGAAAGTACTGAAAAGATAGTGACGGAAGAAAATACTGACGCTGAGCGTGTTAATTTGTGCATTCATGGTACTTGTCCAGTGTCAGAAACCTGTGAAACACCTCTCTCTCTTAATAGAGACACAAAAGATGCAGACATGAAGATGAGACTAAATAGTAGTGCAGAAAACAAGATTCAGGAGTCAATCTTGGAGAACTCTACACCCTCAGATAGAGACACTGTCTTGTATGAATTTTTAGTCAAGTGGGTTGGGCAATCTCACATTCATAATACTTGGGTTTCTGAATCCCAACTGAAAGTTCTAGCGAAGAGGAAACTAGAGAACTACAAATCAAAGTACGGAACTGCAGTGATAAATATTTCTGAGGACCAGTGGAGCCAGCCACAGAGAGTGATTGCTGTTCGTGATTCTAAGGATGGTACTACCGAAGCTTTTGTCAAATGGGCTGGTCTCCCTTATGATGAATGCACGTGGGAAAGATTAGATGAACCTACTGTTGAAAAGTCTTCACATCTGATTGCTGAGTTTAAGCACTTTGAACGCCAAACATTGGATAAGGATGCTGCAAATGATGACCTTCCGAGGAGTAAGGGTAATTTTCAACAAAGTGAGATAGTTTCTCTCATAGAGCAACCTAAGGAGCTCAAAGGAGGTTCGCTGTTCCTGCATCAGCTAGAAGCTTTGAATTGGTTGCGTAAGTGCTGGCATAAATCTAAAAATGTGATCCTTGCTGATGAGATGGGGCTAGGGAAAACTGTATCCGCTTGTGCTTTTATTTCATCATTAAATTTTGAGTTCAAAGTTAGGTTGCCTTGTCTTGTCTTGGTTCCGCTTTCCACAATGCCTAACTGGCTTGCTGAGTTTGCGTTATGGGCCCCTAATTTGAATGTTGTGGAGTATCATGGGTGCGCGAAAGCAAGATCGATAATTCGTCAGTATGAATGGCATGCCAGTGATCCAGATGGGTTAAATAAGAGGTCTGCGTCATACAAATTTAATGTTCTTTTGACTACTTATGAGATGGTGCTTGCTGACTCCTCTCATCTCCGTGGAGTTCCCTGGGAGGTTCTTGTTGTTGATGAGGGGCATCGTCTGAAGAACTCAGGAAGTAAACTTTTCAGTTTGCTCAACACGTTTTCTTTCCAACACCGTGTATTGTTGACTGGCACACCTCTGCAGAACAACATAGGTGAGATGTATAACTTGCTAAATTTCTTGCAGCCTGCTTCATTCCCTTCTCTGTCATCATTTGAAGAGAAGTTTAACGATCTTACGACTGCGGAAAAAGTGGAGGAACTGAAGAAACTTGTTGCTCCTCATATGCTTCGAAGACTTAAAAAGGACGCTATGCAAAATATCCCCCCTAAGACAGAACGCATGGTTCCTGTTGAGTTATCATCCATCCAGGCGGAATACTACCGTGCAATGCTGACAAAAAACTACCAGATTTTACGAAACATAGGAAAGGGGGTTGCTCAGCAGTCAATGCTAAATATCGTCATGCAGCTCCGAAAGGTCTGCAATCATCCATACCTCATACCAGGTACTGAGCCTGATTCCGGATCAGTAGAGTTCCTTCAGGAAATGCGAATAAAGGCATCAGCCAAGCTGACTCTGTTGCATTCGATGCTTAAGCTGTTATCTAAGGATGGTCATCGTGTCCTTATATTTTCACAGATGACAAAGCTTCTTGATATCCTTGAGGATTACTTGACTGTAGAATTTGGGCCCAAAACATTTGAAAGGGTGGATGGTTCAGTATCAGTGGCAGACCGTCAGACTGCAATTGCACGATTCAACCAAGACAAAAGTCGCTTTGTCTTCCTGTTATCCACACGCTCTTGTGGCCTTGGGATCAATCTGGCTACTGCCGACACTGTCATCATTTATGATTCTGATTTCAATCCACATGCTGATATTCAAGCCATGAATCGGGCTCATCGAATTGGACAGTCAAAAATACTTTTGGTGTACAGGCTCGTTGTTCGTGCTAGTGTTGAGGAGCGCATCTTACAGCTCGCAAAGAAGAAGCTTATGCTTGATCAGCTTTTTGTGAACAAGTCGGAATCTCAAAAAGACGTGGAGGACATTCTACGTTGGGGAACCGAAGAACTTTTTAGTGATTCGGCTGGTGTGACTGGAAAATGTACAACTGAAAATTCCAGCAACAAAGACGAAGCAAGTACAGACACTGAACATAAGCATAGAAGGAGGACTGGTGGCTTGGGGGATGTGTACAAAGATAGATGTACAGATGGCAGTACAAAGATCGTGTGGGATGAAAATGCAATTTTAAAATTGCTTGATCGTTCAAACCTTCAGTCCGGGTACTCTGAAAGTGCTGAAGGAGATTTGGATAATGATATGCTTGGTTCAGTAAAGTCGCTGGAATGGAATGACGAGTCAACTGATGAACAAGGAGGAGCTGAATTGCCACCTGTTGTGGCTGGTGATGTCAGTGTACAAAATTCTGAGAAGAAAGAGGATCATTTGGTTAATGTTACTGAAGAAAATGAATGGGACCGACTTTTGCGTATGAGGTGGGAGAGATATCAAAACGAGGAGGAAGCAGCTCTTGGACGAGGAAAGCGCCTAAGAAAAGCTGTTTCTTATAGGGAAGTATTTGCTCCGCATCCAAGTGAAACATTGAGTGAG 4326 0.4242 MRENGSVHNKMIDRNWVMKRKRKRLPCGPDLSNGKEGISVPSESPRSNPPAKRRLKNDINSARSSRKKKGNDGYYFECVICDLGGNLLCCDSCPRTYHLQCLNPPLKRTPPGKWQCSTCCEQNDALKSISQPESISRRARTKIIAEKTKNEIKSSGSVKVSRILESSIAGKKRSSSKGKPALSRTVPSVEKKSDSPQKHVSCSTKSNHSSHGGSVEGISPCVNSDIEKKPNVSCTDATGDRKSSSPTKEVQSSGRTLDLEPSAEHSDRKSDFPCNNGSPGNKQNPPLGHATKKACKRKQNINKEDHLKKSRTNKGKSAVNTSRRRVSKATSASPESSKPRQKRNSVDHLISVRPLKEDIGTKSLGIQQKDEGFPEETSHSSHDLDELGGKVDKTMTCEGNVPDEVQQVDRILGCRVQCSDTISSHISQPKRFSAYLTHAASENNSTRVASDLASQDLLIPENHDGLDNPAGNRVLDVKDADVLLEDGCHSAMNQIDMGKSIENDIRGDKIHLYRRSVAKECIERDAIGSTGRFLKSQGLTDVNSVVQGESVVNTDTVESTEKIVTEENTDAERVNLCIHGTCPVSETCETPLSLNRDTKDADMKMRLNSSAENKIQESILENSTPSDRDTVLYEFLVKWVGQSHIHNTWVSESQLKVLAKRKLENYKSKYGTAVINISEDQWSQPQRVIAVRDSKDGTTEAFVKWAGLPYDECTWERLDEPTVEKSSHLIAEFKHFERQTLDKDAANDDLPRSKGNFQQSEIVSLIEQPKELKGGSLFLHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFISSLNFEFKVRLPCLVLVPLSTMPNWLAEFALWAPNLNVVEYHGCAKARSIIRQYEWHASDPDGLNKRSASYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLQEMRIKASAKLTLLHSMLKLLSKDGHRVLIFSQMTKLLDILEDYLTVEFGPKTFERVDGSVSVADRQTAIARFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKILLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSESQKDVEDILRWGTEELFSDSAGVTGKCTTENSSNKDEASTDTEHKHRRRTGGLGDVYKDRCTDGSTKIVWDENAILKLLDRSNLQSGYSESAEGDLDNDMLGSVKSLEWNDESTDEQGGAELPPVVAGDVSVQNSEKKEDHLVNVTEENEWDRLLRMRWERYQNEEEAALGRGKRLRKAVSYREVFAPHPSETLSE 1442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g01415 1442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 133 IPR013083 -
Eupl02g01415 1442 ProSiteProfiles Chromo and chromo shadow domain profile. 683 745 IPR000953 -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 24 69 - -
Eupl02g01415 1442 SUPERFAMILY Chromo domain-like 677 722 IPR016197 -
Eupl02g01415 1442 ProSiteProfiles Zinc finger PHD-type profile. 75 122 IPR019787 -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 314 339 - -
Eupl02g01415 1442 Gene3D - 768 1010 IPR038718 -
Eupl02g01415 1442 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1096 1248 IPR001650 -
Eupl02g01415 1442 SMART PHD_3 77 120 IPR001965 -
Eupl02g01415 1442 Gene3D - 596 670 - -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 1268 1302 - -
Eupl02g01415 1442 CDD SF2_C_SNF 1091 1218 - -
Eupl02g01415 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 1001 IPR027417 -
Eupl02g01415 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1257 IPR027417 -
Eupl02g01415 1442 SMART DUF1087_2 1375 1436 IPR009463 -
Eupl02g01415 1442 Pfam Chromo (CHRromatin Organisation MOdifier) domain 617 669 IPR023780 -
Eupl02g01415 1442 Pfam Chromo (CHRromatin Organisation MOdifier) domain 685 734 IPR023780 -
Eupl02g01415 1442 CDD CD2_tandem 681 734 - -
Eupl02g01415 1442 Pfam SNF2-related domain 793 1070 IPR000330 GO:0005524|GO:0140658
Eupl02g01415 1442 SUPERFAMILY FYVE/PHD zinc finger 72 122 IPR011011 -
Eupl02g01415 1442 ProSiteProfiles Chromo and chromo shadow domain profile. 614 669 IPR000953 -
Eupl02g01415 1442 SMART chromo_7 612 671 IPR000953 -
Eupl02g01415 1442 SMART chromo_7 681 738 IPR000953 -
Eupl02g01415 1442 SMART ultradead3 773 977 IPR014001 -
Eupl02g01415 1442 Gene3D - 1011 1238 IPR027417 -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 1282 1302 - -
Eupl02g01415 1442 SMART helicmild6 1122 1207 IPR001650 -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 297 312 - -
Eupl02g01415 1442 Pfam Helicase conserved C-terminal domain 1100 1207 IPR001650 -
Eupl02g01415 1442 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 193 1431 - -
Eupl02g01415 1442 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 789 966 IPR014001 -
Eupl02g01415 1442 SUPERFAMILY Chromo domain-like 629 670 IPR016197 -
Eupl02g01415 1442 Pfam CHD subfamily II, DUF1087 1388 1430 IPR009463 -
Eupl02g01415 1442 Pfam PHD-finger 78 121 IPR019787 -
Eupl02g01415 1442 ProSitePatterns Zinc finger PHD-type signature. 78 119 IPR019786 -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 49 69 - -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 199 217 - -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 168 387 - -
Eupl02g01415 1442 FunFam chromodomain-helicase-DNA-binding protein 1-like isoform X1 1011 1238 - -
Eupl02g01415 1442 CDD PHD2_CHD_II 78 119 - -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 340 355 - -
Eupl02g01415 1442 Gene3D - 685 735 - -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 226 259 - -
Eupl02g01415 1442 CDD CD1_tandem 621 667 - -
Eupl02g01415 1442 MobiDBLite consensus disorder prediction 372 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g01415 Eupl-Chr2 31943773 31982496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g01415 758 1234 RAD5 or RAD16-like Gene Family AT1G02670 25.222 1.99e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl02g01415 SNF2_N 3.4e-58 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g01415 - - nnu:104599649 2132.45