LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl01g00572	ATGCCGTATTTGGTTCGCGATCGTCTCTTTATCGGCAACATCAGCGATGCTGCTGAGATTCTCCAGCACGGGAGCACGGACATCACACATATTCTGTCGCTTCTTAGCTCGGCATCCATATCGTTCTTCTCTGAATGGCGCTCTGGTATCTCTATCCCGACGAAGGAAATCCGCAAAGTTTTCATTGGAGGCTCTGGAAGTGGTGGTGCGATCTCTGAGGCTGATGCCGGTGATAGTTCAAACAAGTCCGTGCCGCCGGAGAAGCTATTGTGCTCGGTTGAATTCGCCGGGAAGGATTTGAAGCTGATGAGAATGGCGGTTCCGTTGAGGGACATGGAGAACGAGAATTTATTGGATTATTTGGATGTGTGTTTGGATTTCATCGACGAGAGTAGAAAAGAAGGATCGGTTTTGGTCCATTGCTTTGCGGGCGTATCTAGAAGTGCAGCTATCATTACGGCATACCTGATGAGAACTGGACAACTATCTCAAGAAGATGCACTTGAATCATTACGGGAAAGCTGTGAGTTTGTTTGCCCCAATGATGGTTTTCTGGATCAGTTAAAAATGTTTGAAGAGATGGGTTTCAAAGTTGATCCTGCAAGCTCCATATACAAGCGATTTCGCCTTAAAGTATTGGGTGATTCCTATAACCGAGGGGAACGGATAGACAGTTCCAAATTTGGGGCCGATCCCGGTTTGCCCACAGAAGCAATCTCTTCCGAGGATGCAGCATCTCCAACTGGAGCCAAACCTACTGCTGCCTACCGCTGCAAAAAGTGCAGGAGAGTTGTTGCGTTGCAAGAGAATGTTGTGGGACACACACCTGGAGAGGGCGAGACATCCTTTGAGTGGCAAAAGCGGAAAAGTGGCAACCCATTTAACAGGTCTGACGAGCATGAGTGCACGTCTATCTTTGTTGAGCCCTTACGGTGGATGACCACAGTGGAAGAAGGTGCATTAGAAGGCAAGCTGTTTTGTGCCCATTGTGATGCCCGCTTGGGTTACTTCAACTGGTCAGGCATCCAATGCAGCTGCGGGAGCTGGATCACCCCGGCCTTTCAGCTCCATAAAGGCCGAGTCGACATCAGCACTTTATAG	1101	0.4896	MPYLVRDRLFIGNISDAAEILQHGSTDITHILSLLSSASISFFSEWRSGISIPTKEIRKVFIGGSGSGGAISEADAGDSSNKSVPPEKLLCSVEFAGKDLKLMRMAVPLRDMENENLLDYLDVCLDFIDESRKEGSVLVHCFAGVSRSAAIITAYLMRTGQLSQEDALESLRESCEFVCPNDGFLDQLKMFEEMGFKVDPASSIYKRFRLKVLGDSYNRGERIDSSKFGADPGLPTEAISSEDAASPTGAKPTAAYRCKKCRRVVALQENVVGHTPGEGETSFEWQKRKSGNPFNRSDEHECTSIFVEPLRWMTTVEEGALEGKLFCAHCDARLGYFNWSGIQCSCGSWITPAFQLHKGRVDISTL*	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl01g00572	366	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	4	197	IPR029021	-
	Eupl01g00572	366	SMART	dsp_5	1	194	IPR020422	GO:0006470\|GO:0008138
	Eupl01g00572	366	PIRSF	DUSP12	3	45	IPR016278	GO:0006470\|GO:0008138
	Eupl01g00572	366	PIRSF	DUSP12	86	366	IPR016278	GO:0006470\|GO:0008138
	Eupl01g00572	366	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	118	173	IPR000387	GO:0016311\|GO:0016791
	Eupl01g00572	366	Gene3D	Protein tyrosine phosphatase superfamily	4	214	IPR029021	-
	Eupl01g00572	366	FunFam	Dual specificity protein phosphatase 12-like	4	214	-	-
	Eupl01g00572	366	ProSitePatterns	Tyrosine specific protein phosphatases active site.	139	149	IPR016130	GO:0016311\|GO:0016791
	Eupl01g00572	366	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	1	363	-	-
	Eupl01g00572	366	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	1	197	IPR020422	GO:0006470\|GO:0008138
	Eupl01g00572	366	MobiDBLite	consensus disorder prediction	224	251	-	-
	Eupl01g00572	366	Pfam	Dual specificity phosphatase, catalytic domain	101	193	IPR000340	GO:0008138\|GO:0016311

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl01g00572	Eupl-Chr1	22078784	22091722	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl01g00572	69	193	Protein tyrosine phosphatase (PTP) family	AT3G06110	33.858	4.41e-15	70.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl01g00572	K14819		-	ming:122068071	606.675