Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3048 ATGCAGTGTAGTTCTAATAGTGAGCCTATGTCAACGGTGTCCAAGGAAGACAATTTGGTCATGTCTTCGGAGGATTCTTCTTCCTCAGATGAGTCTGAGCTTGAATTGGGTCTTGGGTTAAGCCTATCTCATCGTCCCGGTGTGAAGTCCCAAACACCTTCAACGGGTCACTTTGCGAAAATATTAACGGCTAAAAATTTTCTTTCTGTGATTTCTTCTTCTACTGCCTCTTCATTAGCCTCATCAACCTCCTCTTCCTCTTCCTCTTCCTCTCCTTCCTCATTGACCAGGCCTAACGTCGCGGCCGGCACCAAGAGAACTGCCGACTCTGTTGTCGCCGCTAATGGCCCCAGTCAGGTTGTAGGATGGCCTCCCCTTGGAGCATATAGAATGAATAGCTTTAATAACCGTGCAAAATCACCAGCCACCCATGTGTTCTACTCTGTGGTTGAGAAAAATAAGAGCAATAATACAGAGGCAAGGAAGAGTACTGACAACAGCAGTGGTAAAGACAATATTAGTGCCAAAGGTGAAGGGCATCTCAAGAGTTCCTGGTTTGTGAAGGTAAATATGGATGGACTACCGATTGGAAGGAAGGTTGATTTGAGTGCTCATAGTTCCTATGAAAGCTTAGCACATGCTTTGGAGGAGATGTTTAATGAACAAACTGCAGCTGTGAGTTGTAAAAGATCAAATGGGAATGATTGTAGCATTGTACTTGGAGCACAAAGACAGTCAAAATTGCTGGACGGATCTTCCAAGTTTGTACTTACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTACCGTGGGGGATGTTTCTAAGCTCTGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCACCTAGGTTGGAAGAAAAGAACAGCAGACAGAGAAGTTAG 927 0.4477 MQCSSNSEPMSTVSKEDNLVMSSEDSSSSDESELELGLGLSLSHRPGVKSQTPSTGHFAKILTAKNFLSVISSSTASSLASSTSSSSSSSSPSSLTRPNVAAGTKRTADSVVAANGPSQVVGWPPLGAYRMNSFNNRAKSPATHVFYSVVEKNKSNNTEARKSTDNSSGKDNISAKGEGHLKSSWFVKVNMDGLPIGRKVDLSAHSSYESLAHALEEMFNEQTAAVSCKRSNGNDCSIVLGAQRQSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEEKNSRQRS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3048 308 FunFam Auxin-responsive protein 180 299 - -
Dere01g3048 308 ProSiteProfiles PB1 domain profile. 184 291 IPR000270 GO:0005515
Dere01g3048 308 MobiDBLite consensus disorder prediction 155 173 - -
Dere01g3048 308 MobiDBLite consensus disorder prediction 1 54 - -
Dere01g3048 308 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 294 IPR003311 GO:0005634|GO:0006355
Dere01g3048 308 MobiDBLite consensus disorder prediction 1 27 - -
Dere01g3048 308 MobiDBLite consensus disorder prediction 79 109 - -
Dere01g3048 308 MobiDBLite consensus disorder prediction 79 103 - -
Dere01g3048 308 Gene3D - 180 301 - -
Dere01g3048 308 SUPERFAMILY CAD & PB1 domains 181 287 - -
Dere01g3048 308 Pfam AUX/IAA family 34 298 IPR033389 -
Dere01g3048 308 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3048 Dere-ChrDere01 45011894 45015171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3048 188 298 B3 DNA Binding Superfamily AT1G59750 32.432 5.95e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere01g3048 AUX_IAA 1.3e-61 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3048 01 45011894 45015171 Dere02g0851 02 8056792 8059860 CCT
Dere01g3048 01 45011894 45015171 Dere01g3048 01 45011894 45015171 ECH