Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02979 ATGCTCCACACTCATCACCACCTCTTCTTCCCTTCACCACACTCCCATGCGTCACCATTTCCCTTTCCTTCTGCAACCAAAATCCTTCGCTCTCCAACATTTCCTGCTACTTCCATCAGAAGAGTTTCTTCCGCTCTCAGGTTCCGCAACCGTGGCCGCACCGTCACAAACTCCGCGCCCAATGGAGGCGTGAGCGAAACGGAGAATAAGAAACAACCGGTCTATAGGGCGTACCCTTTCCACGAAATCGAGCCCAAGTGGCAGCGTTTTTGGGAGCACAATCGCACGTTCCGAACCCCCGATGACGATATCGACACTACGAAACCTAAATACTATGTTCTTGACATGTTTCCTTACCCTAGTGGAGCTGGACTTCATGTTGGTCATCCTCTGGGATATACTGCCACAGACATTCTAGCTAGGTATAAACGTATGCAGGGATATAATGTGTTACATCCAATGGGGTGGGATGCTTTTGGATTGCCAGCAGAACAGTATGCTATTGAGACAGGAACTCACCCAAAGCTCACGACCTTGAGGAATATCGATGGAGGGTGGCGGCCGCCGGCGACGCCAAGAGGGTCGACGAAGCTGTGCCCATCCGATTCGGGGGGCAAGGTATTCCAGTTCAAGAGGGACAAGCTGGCGTTCTACGACAAGGAATGTTCTCGCATCGCGGAGCACGTGTACCTCGGCAGCGACACGGTGGCGAAGAGCCAGGAGCTTCTGCGGCGGCACGGGATCACGCACGTGCTGAATTGCGTGGGGTTCGTGTGCCCCGAGTATTTTAAAACGGACTTCGTGTACAAAACCCTCTGGCTCCAGGACAGCCCCTCCGAGGACATCACCAGCATTCTCTACGACGTCTTCGATTACTTCGAGGATGTCCGGCAGCAGGGTGGCCGCGTCCTCGTACACTGCTGCCAGGGCGTGTCGCGATCCACTTCCCTTGTCATCGCCTATCTCATGTGGAGGGAAGGCCAAAGCTTCGAGGACGCCTTTCACTACGTCAAAAACGCGCGTGGCGTCACCAACCCTAACATGGGTTTCGCCTGCCAGCTCTTGCAGTTTTTTAAGCTCTCCTGCATACATTGCTTTGGCTCTTCAGTTATCGAATCTGCAGTGACAGATTGTTGA 1137 0.5365 MLHTHHHLFFPSPHSHASPFPFPSATKILRSPTFPATSIRRVSSALRFRNRGRTVTNSAPNGGVSETENKKQPVYRAYPFHEIEPKWQRFWEHNRTFRTPDDDIDTTKPKYYVLDMFPYPSGAGLHVGHPLGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKLTTLRNIDGGWRPPATPRGSTKLCPSDSGGKVFQFKRDKLAFYDKECSRIAEHVYLGSDTVAKSQELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLQDSPSEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLQFFKLSCIHCFGSSVIESAVTDC 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02979 378 SUPERFAMILY Nucleotidylyl transferase 70 182 - -
Cca11g02979 378 SMART dsp_5 221 360 IPR020422 GO:0006470|GO:0008138
Cca11g02979 378 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 120 130 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca11g02979 378 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 210 359 IPR029021 -
Cca11g02979 378 CDD DSP 222 356 - -
Cca11g02979 378 PANTHER MKPA PROTEIN 209 359 - -
Cca11g02979 378 Gene3D Protein tyrosine phosphatase superfamily 206 360 IPR029021 -
Cca11g02979 378 Gene3D HUPs 76 187 IPR014729 -
Cca11g02979 378 Pfam Dual specificity phosphatase, catalytic domain 229 357 IPR000340 GO:0008138|GO:0016311
Cca11g02979 378 ProSitePatterns Tyrosine specific protein phosphatases active site. 305 315 IPR016130 GO:0016311|GO:0016791
Cca11g02979 378 ProSiteProfiles Dual specificity protein phosphatase domain profile. 221 363 IPR020422 GO:0006470|GO:0008138
Cca11g02979 378 MobiDBLite consensus disorder prediction 51 70 - -
Cca11g02979 378 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 280 341 IPR000387 GO:0016311|GO:0016791
Cca11g02979 378 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 209 359 - -
Cca11g02979 378 Pfam tRNA synthetases class I (I, L, M and V) 86 165 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca11g02979 378 MobiDBLite consensus disorder prediction 51 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02979 Cca-Chr11 57027818 57031411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02979 214 359 Protein tyrosine phosphatase (PTP) family AT3G06110 37.671 1.92e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02979 - - gmx:100782633 327.405