Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02400 ATGACCATGGACTCTTCTTCACCACCTTCCCACAACAACACCAACTCACTCCCTTTCTCTCTTTCCAATCACTTCCAGAACCcttcttcttcttcttcctcctcttcctctcccctctctcttttccactccttcacctatccatcactcactctcacagGCAGTACCACGGTGGACGCATCCCCCGAGGCCACCGCCGCCGGAGCAACCAACCTCTCCATATTCACCGGCGCCCCAAAGTTCGAGGACTTTCTGGGCGGCTCCGCCACCTGTGCACCGCCACAGCTTCCGCAGTTCTCCACCGacaacaacaacaacaacCTTTACGATTCGGAGCTTAAGACAACAATAGCCGCGTGCTTCCCTCGCGGCTTCGCCGCCGAAGCCACCGCCGAACCGCAAAAGCCCTCCCCCAAGAAAACTGTGGACACCTTCGGTCAACGCACCTCCATCTACCGCGGCGTTACACGACATAGATGGACCGGGAGATATGAGGCTCATCTGTGGGATAATAGTTGTAGAAGGGAGGGACAAAGTAGAAAAGGAAGGCAAGTTTACTTGGGTGGTTATGACAAGGAAGATAAGGCAGCCAGAGCTTACGATCTTGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACCAACTTTCCAATTTCCAACTATGAGAAGGAACTGGATGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCCAGAATTGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACCCAAGAAGAAGCTGCGGAGGCCTATGACATTGCAGCTATCAAATTCAGGGGATTAAATGCTGTGACAAACTTCGACATGAGTCGCTACGATGTAAAAAGCATTGCCAATAGCACACTTCCCATTGGAGGATTATCCAGTAAGAACAAAAACAACAACGATTCTGTATCTGAGAGCAAAAGCCACGAGGCAAGCCGATCCGACGAACGCGATCCATCATCAGCTTCATCCGTGACCTTTGGATCACAGTCTCAGCAACAACAGCCACCTTCAAGCTCTACCTTGAGCTTTGCCATTCCGATAAAGCAAGACCCTTCAGATTACTGGTCCGTTCTGGGGTACAATCATAGCCATAATCCTCTTTCCCTCGAAAGGAACACTACTAGTGTTGTTACCTCAGCATCGTTCCCGTGTTCCAACAATGCTAGTAACAATAATGTGACAGCAACACCCTTCCACATGGAGTTCTCAAGTGCCCCCTCAAGCACCGGCAGCGATAACAATGGCGCGTTTTTCAGTGGAGGCATGTTTGTTCATCAGCAACAAAGTGGAAGCAGTGGTTCCTCTTTGAGCTGTTCAATCCCATTCGCCACGCCCATATTTTCTCTAAATAGTAATGCTAGTTATGAGAGCAGTGGTGGTTATGGAAACTGGATTGGTCCAAGCCTGCACACATTCCAATCCCATGCAAAAGCGAGTCTCTTTCAAACGCCAATATTTGGCATGGAATGA 1587 0.4726 MTMDSSSPPSHNNTNSLPFSLSNHFQNPSSSSSSSSSPLSLFHSFTYPSLTLTGSTTVDASPEATAAGATNLSIFTGAPKFEDFLGGSATCAPPQLPQFSTDNNNNNLYDSELKTTIAACFPRGFAAEATAEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELDEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKNNNDSVSESKSHEASRSDERDPSSASSVTFGSQSQQQQPPSSSTLSFAIPIKQDPSDYWSVLGYNHSHNPLSLERNTTSVVTSASFPCSNNASNNNVTATPFHMEFSSAPSSTGSDNNGAFFSGGMFVHQQQSGSSGSSLSCSIPFATPIFSLNSNASYESSGGYGNWIGPSLHTFQSHAKASLFQTPIFGME 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02400 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 30 444 - -
Cca11g02400 528 MobiDBLite consensus disorder prediction 326 382 - -
Cca11g02400 528 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Cca11g02400 528 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Cca11g02400 528 MobiDBLite consensus disorder prediction 1 37 - -
Cca11g02400 528 CDD AP2 252 313 IPR001471 GO:0003700|GO:0006355
Cca11g02400 528 ProSiteProfiles AP2/ERF domain profile. 151 217 IPR001471 GO:0003700|GO:0006355
Cca11g02400 528 ProSiteProfiles AP2/ERF domain profile. 253 311 IPR001471 GO:0003700|GO:0006355
Cca11g02400 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 30 444 - -
Cca11g02400 528 SUPERFAMILY DNA-binding domain 252 313 IPR016177 GO:0003677
Cca11g02400 528 MobiDBLite consensus disorder prediction 340 355 - -
Cca11g02400 528 Pfam AP2 domain 151 209 IPR001471 GO:0003700|GO:0006355
Cca11g02400 528 Pfam AP2 domain 253 303 IPR001471 GO:0003700|GO:0006355
Cca11g02400 528 CDD AP2 150 219 IPR001471 GO:0003700|GO:0006355
Cca11g02400 528 SUPERFAMILY DNA-binding domain 150 219 IPR016177 GO:0003677
Cca11g02400 528 SMART rav1_2 151 223 IPR001471 GO:0003700|GO:0006355
Cca11g02400 528 SMART rav1_2 253 317 IPR001471 GO:0003700|GO:0006355
Cca11g02400 528 Gene3D AP2/ERF domain 253 313 IPR036955 GO:0003700|GO:0006355
Cca11g02400 528 Gene3D AP2/ERF domain 151 219 IPR036955 GO:0003700|GO:0006355
Cca11g02400 528 MobiDBLite consensus disorder prediction 356 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02400 Cca-Chr11 50805383 50809080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02400 85 528 AP2-EREBP Transcription Factor Family AT5G57390 53.404 1.53e-141 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Cca11g02400 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02400 K09285 - gmx:100797828 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02400 11 50805383 50809080 Cca11g02400 11 50805383 50809080 ECH