Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01561 ATGGCCAACCCAGATGAAGTTTCAGCCCTAAACCGCATCAAATTGCATCTTTTGGGTGAACTCTCTCCACTCAGCACACCCCAAACAAAACAAAATCATCAACAACAACCTTGGTTCGAACTACACGAAGCGAACCCTAGCCCCTCTCAGTCTTCTAACTCTGACTCTTCTGTTTCCTTCAACCACTACTTCACGGAAACCCAATTTCCCCTCTTCGAATTCGATTCCAAGCCCGAAGTAATCGACCTCGAAACCCCAAAGTCCCTTAATTCCACTTCCAATCAGGAGAAGAAAGGTCAATTGAGTCGTAAACCTTCGCTGCAAATCTCTCTCCCGAAGAAGACCGAGTGGATCCAGTTCGGGAACCCGGAGGAgccgccgccgccgccgccgGAGAAGAAGCACTACCGCGGCGTCCGGCAGCGGCCGTGGGGGAAGTTCGCGGCCGAGATCCGCGACCCGAACAAGCGCGGGTCCAGGGTGTGGCTCGGGACCTTCGACACCGCCATCGACGCCGCCAAGGCCTACGACCGCGCCGCCTTCAGGCTCCGCGGCGCGAAGGCCATCCTGAACTTTCCCCTCGAGGTGAGCGCggcggcggaggaggccggcgacgagaggaagcggcggcgcgaggaggaggaggaggcggaggtggaggaagtgaaggcggtggtggtgaagaaggagagaacgacgacggaACATGACGTGAATTGTTTTAGGGAGATGCCGTTAACGCCGTCTATGTGGACGGGGTTCTGGGACAGTGATGTTAAGGAGATTTTCAACGTGCCGCCGTTGTCGCCGTTATCTCCTTTTGGATTTTCGCCCCTCATGGTTGTGTAA 849 0.4594 MANPDEVSALNRIKLHLLGELSPLSTPQTKQNHQQQPWFELHEANPSPSQSSNSDSSVSFNHYFTETQFPLFEFDSKPEVIDLETPKSLNSTSNQEKKGQLSRKPSLQISLPKKTEWIQFGNPEEPPPPPPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIDAAKAYDRAAFRLRGAKAILNFPLEVSAAAEEAGDERKRRREEEEEAEVEEVKAVVVKKERTTTEHDVNCFREMPLTPSMWTGFWDSDVKEIFNVPPLSPLSPFGFSPLMVV 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01561 282 Coils Coil 196 232 - -
Cca11g01561 282 MobiDBLite consensus disorder prediction 23 58 - -
Cca11g01561 282 SUPERFAMILY DNA-binding domain 135 195 IPR016177 GO:0003677
Cca11g01561 282 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Cca11g01561 282 PRINTS Ethylene responsive element binding protein signature 175 195 IPR001471 GO:0003700|GO:0006355
Cca11g01561 282 Pfam AP2 domain 135 185 IPR001471 GO:0003700|GO:0006355
Cca11g01561 282 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
Cca11g01561 282 CDD AP2 134 193 IPR001471 GO:0003700|GO:0006355
Cca11g01561 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 3 269 - -
Cca11g01561 282 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 269 - -
Cca11g01561 282 MobiDBLite consensus disorder prediction 85 115 - -
Cca11g01561 282 Gene3D AP2/ERF domain 134 195 IPR036955 GO:0003700|GO:0006355
Cca11g01561 282 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Cca11g01561 282 MobiDBLite consensus disorder prediction 83 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01561 Cca-Chr11 38920314 38921509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01561 1 282 AP2-EREBP Transcription Factor Family AT5G47230 47.950 4.17e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca11g01561 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01561 K09286 - gmx:100800453 339.732