Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01472 ATGGGTGACATGTACCACTTCGACAAGAACCTCTCTTCGCAGGACGAAATCTCTCTTTTCCTGCGTCAGAttctcctccgttcatcaccttcttcttcttcttcttcCCACTTCATGCCCGGATCCAACGCTCCTCACCATAACCTAAATGCACACCCTTCTTTCTCGCCCTCACCGCTCCAAGATGGAAAGATCCCAGCCCTTGATTCCACCGCTTCCTTTGCTATCAAGCCTCTGCATGTTTCTGCTGCAAATGTGTCTTCTTCACCTGTTGGAGTCAGTGAGAACGAAAATGATGACTATGACTGTGAAAGTGAGGAGGGTGTTGATGCTTTGGCCGAAGAAGTTCCAACAAAGCCTGCTCCTTCCAGGAGTTCATCTAAAAGATCAAGAGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTAATTCCCAATTCTAACAAGACGGATAAGGCTTCAATGCTCGATGAAGCTATTGAGTACCTTAAACAGCTTCAGCTACAAGTGCAGATGCTGTCGATGAGAAATGGATTGAGTTTGCATCCTATGTGCTATCCTGAAGGCTTGCAGTTATCTCAGATGAGTATGGAATTAAGTGAAAGAAACAGGTCTACCCCTCTAAACATGACAGCTACTCTGCCTCTGCACCAAGAGAACCCTTTGCACTATGCATCCAATCTACCTAACAAACACGCTGTGCCAAATCAGCCATCAGCGCCCTATCCTCCATACATTAACAACTCAGAAACTTCTTTCGGGCTGGAATCCCGAATCCAACCAGATATAAAACCTCTTCAACACAAAGGAACTTCTGAGCCTATACGAGGGGAAGACCTTTTGCATTACCAGCAATCAAGTGCTATCCATTCAGATGCCAATACTTTAGTTGGCTCCCAAGTTGTGAAAGAATTCGAGTCAGGCACTACAGCATCACTCTCTTTTGACACGCAAACATGTGATCCTAAGGGCAACAACTCTTTGCACACATGCATTGGAGGAAGAGATCAGTCAGGAGTGGTCATAAGAAATAGTGAGGCCAACATTGTTGTTACATCACAGTTAAGTAGGTAA 1116 0.4337 MGDMYHFDKNLSSQDEISLFLRQILLRSSPSSSSSSHFMPGSNAPHHNLNAHPSFSPSPLQDGKIPALDSTASFAIKPLHVSAANVSSSPVGVSENENDDYDCESEEGVDALAEEVPTKPAPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCYPEGLQLSQMSMELSERNRSTPLNMTATLPLHQENPLHYASNLPNKHAVPNQPSAPYPPYINNSETSFGLESRIQPDIKPLQHKGTSEPIRGEDLLHYQQSSAIHSDANTLVGSQVVKEFESGTTASLSFDTQTCDPKGNNSLHTCIGGRDQSGVVIRNSEANIVVTSQLSR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01472 371 MobiDBLite consensus disorder prediction 129 143 - -
Cca06g01472 371 MobiDBLite consensus disorder prediction 97 111 - -
Cca06g01472 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 191 IPR036638 GO:0046983
Cca06g01472 371 Coils Coil 170 190 - -
Cca06g01472 371 MobiDBLite consensus disorder prediction 31 57 - -
Cca06g01472 371 PANTHER TRANSCRIPTION FACTOR SPATULA 12 307 - -
Cca06g01472 371 MobiDBLite consensus disorder prediction 31 59 - -
Cca06g01472 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Cca06g01472 371 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 307 IPR031066 -
Cca06g01472 371 Pfam Helix-loop-helix DNA-binding domain 135 181 IPR011598 GO:0046983
Cca06g01472 371 Gene3D - 126 190 IPR036638 GO:0046983
Cca06g01472 371 MobiDBLite consensus disorder prediction 85 143 - -
Cca06g01472 371 CDD bHLH_AtPIF_like 132 193 - -
Cca06g01472 371 SMART finulus 137 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01472 Cca-Chr6 29642223 29645642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01472 96 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 71.667 2.24e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g01472 HLH 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01472 - - var:108334706 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01472 06 29642223 29645642 Cca11g01330 11 34336890 34343985 PCT