Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01833 ATGGCTTTCTTTAGGAACTATTCAAATGATACAGTCTCACATGGTGTCATGGAAGATAAAAGCCAAGAACAGAATGCTAATAGAGTTCATAGATCAGTAGGTAATGCATGTACTGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGAAGGTGAACCGGATGGTTCCAGTAGACTGCAAACTGAGACAACAGTCGATGATGGAGATGCTGTAAAAGAGTCAAACCTGCAGACTGGTGGAGGGTGGGGTTCAACATTCTGGAAGGACTGTGGGCAAATGGGCACTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAACGGGAAGATTAGACTCAGATGATGATGATGGACAAAAGGAGGCAGTAAAAGGTCCCAGAAGTCATGCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAGTATTATGAGCAGGATGGAGAAGAGCAAAGTGACTCATTGCATTATGGTGGAATCAAAAAGCCCACTGGATCAAATTCATGGCCTCAAAGaatgtcgactacggtgaatagaactttgcataggaatttgaggttttcagatgatgctgaagataatgatggtgaagatgatgatgatgacgatgatggtgataatgatggtgacgatgctgattatgatgaagaagatgaagcagatgAAGATGATCCTGATGATGCAGACTTTGAGCCTGCCGCAAGTGGTCATGCTGGAAACAAGGATAAGGATTGGGAAGGTGAAGGCTCGgatgaagatgatgatagtgatgaaaatatagctgtctcagatgatgatgatgaATCTTTCTATGCTAAAAGACCTAAAGGAAGGCAGCGTGGTAAGGTTGGACAAAACATAAAACCTACCAGAGATCGCAAAGTGTATGCTGCATCTGGTCGACAAAGAAGAGTCAAATCATCTTTTGAGGAGAATGAGTCAACAACGGAGGATTCTGACAGTGATAGTGATGAGGATTTCAAAAGTACAAAAAAGCGGAGTGTTCATGTCCGCAAGAATAATGGCCGATCTTCTGCATCCACAGGTTTATCTACGCGCAATAGTGAGGTTCGCACTTCTAGTAGGTCAGTTAGGAAGGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAAAAGAAAAAGTCCCAAAAGGAAGAAGTTGAGGAGGATGATGGTGACTCCATTGAGAAAGTGCTTTGGCATCAGCCAAAGGGTATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTATTAATGAGTCACTTGTTTGATTTGGAATTTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAGTCTCATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGATGACATCAGGTACAGGAGGACAATCTCAAGAGAGGAGATTGAGGTAAATGATGTTAGTAAGGAGATGGATTTGGATATTATCAAACAGAACAGTCAGGTTGAAAGAATAATTTCAGATAGGATCAGCAAAGATAATTCTGACAATGTTATTCCAGAATACTTGGTTAAGTGGCAAGGACTATCTTATGCTGAAGCTACTTGGGAAAAGGACATTGATATTGCTTTTGCACAACATGCTATTGACGAGTATAAGGCTCGTGAGGCTGCTATGTCAGTTCAAGGAAAGACGGTAGATTCTCAGCGTAAGAAGAGCAAAGTAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGAGGAAAGCTTCGTGATTATCAACTTGAGGGTCTTAATTTTCTTGTTAACAGTTGGAGGAATGATACAAATGTCATTTTAGCAGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTTTACAGAATGCCCAGCAAATCCATGGACCTTTCCTTGTAGTTGTTCCTTTGTCCACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCAAGTCGGGAGGTTTGTCAACAATATGAATTTTATAATGATAAAAGGCCTGGAAAGCCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAGTTTTGAAGGATAAGGCTGTTCTCTCCAAGATCAAATGGACTTATCTGATGGTGGATGAAGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACAACACTTTCTGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTGCAGAACAGTGTGGAAGAGCTATGGGCTTTGCTTCATTTCCTTGATCCTGACAAGTTCAGAAGCAAGGATGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTTAACGAGAATGAGCTCGCAAATCTTCATATGGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCACCCAAAATTGAGCGTATCCTAAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTAGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGCGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAGAAGTGCTGCAACCATCCCTTTTTGTTTGAAAGCGCTGACCATGGCTATGGCGGGGACTTGGGAAGTAGTGACAACAGTAAACTAGAGAGGATTGTCTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAGATTGCACGAAACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAGTATATGTCACTACGAGGGTTTCAATTTCAGAGACTTGATGGAAGTACAAAAGCTGAGCTGCGGCAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGACTTTTGCTTCCTTCTTTCAACGCGAGCAGGAGGTCTTGGTATCAACCTTGCTACAGCAGACACTGTCATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAGATGGTGCTGGACCACTTGGTTATTCAAAAACTAAATGCAGAGGGTAGACTGGAGAAGAAAGAGGCCAAAAAAGGAGGAAGTTATTTTGATAAAAATGAGCTTTCTGCAATCTTACGATTTGGAGCAGAGGAGCTATTTaaggaagaaagaaatgatgaagaaagcaagaaaCGACTCTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGGTGCAGAAGAAGGACATGAGTTATTAAGTGCGTTTAAGGCAAGTTATGCAGACAATACTGTTGCAAATTTTTGCAATGATGAAGATGATGGAAGTTTCTGGAGCCGTTGGATAAAGCCTGATGCTGTATTCCAAGCAGAGGAAGCTCTTGCTCCTCGATCTGCTAGAAATATTAAAAGCTATGCAGAGGTTGATCCATCTGAAAGAAGTAATAAAAGAAAAAAGAAGGAGCCTGAACCACCTGAACGAGTTCAGAAACGGCGGAAAGCAGAGTATTCTGCTCCTGCAGTACCAATGATTGAGGGGGCATCTGTCCAAGTGAGAAGTTGGTCATATGGGAATTTATCAAAAAGAGATGCACTCCGTTTTTCTCGTTCAGTTATGAAATATGGGAATGAGAGCCAAATTGACTTAATTGCTGCTGAGGTTGGTGGAGGTGTTGGGGCAGCTCCACCTGGTGCACAGATTGAACTTTTCAATGCTCTAATTGATGGTTGTACAGAAGCTGTGGAACTTGGAAATCTAGATATAAAGGGGCCTTTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAATGATCTACTTACCCGTGTTCAGCAACTTCAACTTCTGGCAAAGCGCATTGGTCGATATGAAGATCCTATTGCACAATTTCGTGTTCTGTCATATCTCAAACCATCAAATTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGGATACATTACCATGGGTTTGGTAATTGGGAAAATATTAGATTAGATGAAAGACTTGGCCTTTTGAAAAAAATTGCACCCGTAGAACTTCAACACCATGAAACTTTCTTGCCACGTGCTCCAAATTTGAAGGACCGTGCTAATGCACTTTTGGAGCAAGAACTTGCGGTTCTTGGTGTGAAAAATGCCAATAGCAGAGTTGGACGGAAGCCTACCAAGAAAGAGAGAGAAAATATGATTAACATCTCACTGCGTGGGCAGGAGAAAAAGAAAAAATCGGGCTCTGTTAATGTCCAAATGAGAAAAGATAGATTTCAGAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAATGAGGAAGTATATGAGCAATTCAAGGAGGTAAAATGGATGGAATGGTGCCAAGATATGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTTGAAAATACGCAACTATTTACAACTTCTTGGGCGAAGGATAGATCAAATTGTGTTGGACCATGAAGAGGAACCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATATGTCTCCACTTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGAAGAGGCGGGGATTGGCCCTTCTCACGCCAATGGGTCTGTTTCATTTAGCAGAAATGGAAACCCATTCCGTCGCCATATGGAGAGGCAAAGAGGATTAAAGAATATGACTACATATCAAATGCCAGAACAAGTTAATAATAGTGGGAAATCTGAGGCATGGAAACGACGAAGAAGAGCAGAAAGTGATAGTCATTTCCAGGGTCAGCCGCCACCTCAAAGGAGCATGAGCAATGGAATCCGGATTACTGATCCTAACTCACTCGGGATCCTAGGTGCTGGACCATCGGACAAACGCTTTGCTAGTGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTCCACGACAAGGCTTTTCTTCAGGAGGTATAAAGTAG 5238 0.3929 MAFFRNYSNDTVSHGVMEDKSQEQNANRVHRSVGNACTDATSSEKEFDMNMEAQYESEGEPDGSSRLQTETTVDDGDAVKESNLQTGGGWGSTFWKDCGQMGTQNGSESGQESKTGRLDSDDDDGQKEAVKGPRSHADVPAEEMLSDEYYEQDGEEQSDSLHYGGIKKPTGSNSWPQRMSTTVNRTLHRNLRFSDDAEDNDGEDDDDDDDGDNDGDDADYDEEDEADEDDPDDADFEPAASGHAGNKDKDWEGEGSDEDDDSDENIAVSDDDDESFYAKRPKGRQRGKVGQNIKPTRDRKVYAASGRQRRVKSSFEENESTTEDSDSDSDEDFKSTKKRSVHVRKNNGRSSASTGLSTRNSEVRTSSRSVRKVSYVESEESEEADEGKKKKSQKEEVEEDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLMSHLFDLEFDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMDDIRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIISDRISKDNSDNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMSVQGKTVDSQRKKSKVSLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNDKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWTYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDLGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAGAEEGHELLSAFKASYADNTVANFCNDEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEVDPSERSNKRKKKEPEPPERVQKRRKAEYSAPAVPMIEGASVQVRSWSYGNLSKRDALRFSRSVMKYGNESQIDLIAAEVGGGVGAAPPGAQIELFNALIDGCTEAVELGNLDIKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIGRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWENIRLDERLGLLKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSRVGRKPTKKERENMINISLRGQEKKKKSGSVNVQMRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDMMVEEMKTLKRLHRLQQTSANLPKEKVLLKIRNYLQLLGRRIDQIVLDHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQEEAGIGPSHANGSVSFSRNGNPFRRHMERQRGLKNMTTYQMPEQVNNSGKSEAWKRRRRAESDSHFQGQPPPQRSMSNGIRITDPNSLGILGAGPSDKRFASEKPYRTQPGGFPPRQGFSSGGIK 1745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01833 1745 MobiDBLite consensus disorder prediction 1206 1234 - -
Cca05g01833 1745 CDD CD1_tandem 401 481 - -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 197 235 - -
Cca05g01833 1745 Coils Coil 1122 1149 - -
Cca05g01833 1745 Gene3D - 389 516 - -
Cca05g01833 1745 Gene3D - 839 1069 IPR027417 -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 253 271 - -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 1655 1669 - -
Cca05g01833 1745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 928 1079 IPR001650 -
Cca05g01833 1745 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 104 1677 - -
Cca05g01833 1745 SMART ultradead3 604 804 IPR014001 -
Cca05g01833 1745 SMART helicmild6 954 1038 IPR001650 -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 1686 1704 - -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 1655 1745 - -
Cca05g01833 1745 Pfam Helicase conserved C-terminal domain 925 1038 IPR001650 -
Cca05g01833 1745 ProSiteProfiles Chromo and chromo shadow domain profile. 516 580 IPR000953 -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 291 319 - -
Cca05g01833 1745 Pfam SNF2-related domain 627 896 IPR000330 GO:0005524|GO:0140658
Cca05g01833 1745 MobiDBLite consensus disorder prediction 1 405 - -
Cca05g01833 1745 Pfam Chromo (CHRromatin Organisation MOdifier) domain 517 571 IPR023780 -
Cca05g01833 1745 CDD SF2_C_SNF 914 1049 - -
Cca05g01833 1745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 832 1114 IPR027417 -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 27 44 - -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 97 113 - -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 114 143 - -
Cca05g01833 1745 Gene3D - 599 838 IPR038718 -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 1 20 - -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 1670 1684 - -
Cca05g01833 1745 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 104 1677 - -
Cca05g01833 1745 Gene3D - 518 570 - -
Cca05g01833 1745 Gene3D - 1342 1455 - -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 346 372 - -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 170 188 - -
Cca05g01833 1745 Pfam Domain of unknown function (DUF4208) 1523 1615 IPR025260 -
Cca05g01833 1745 SMART chromo_7 514 573 IPR000953 -
Cca05g01833 1745 SUPERFAMILY Chromo domain-like 495 571 IPR016197 -
Cca05g01833 1745 SMART DUF4208_2 1511 1616 IPR025260 -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 1204 1235 - -
Cca05g01833 1745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 829 IPR027417 -
Cca05g01833 1745 ProSiteProfiles Chromo and chromo shadow domain profile. 403 491 IPR000953 -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 373 405 - -
Cca05g01833 1745 CDD CD2_tandem 514 570 - -
Cca05g01833 1745 Coils Coil 1068 1088 - -
Cca05g01833 1745 MobiDBLite consensus disorder prediction 1620 1643 - -
Cca05g01833 1745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 620 792 IPR014001 -
Cca05g01833 1745 SUPERFAMILY Chromo domain-like 400 483 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01833 Cca-Chr5 38104558 38122636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01833 630 1065 RAD5 or RAD16-like Gene Family AT1G02670 25.992 4.40e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca05g01833 SNF2_N 3.5e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01833 K11367 - gmx:100808039 3016.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01833 05 38104558 38122636 Cca05g01833 05 38104558 38122636 ECH