Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00001 ATGATCATTCCAGAGAAGAATCGTCGAGAGATCTGCAAGTACCTCTTCCAAGAGGGAGTTTGCTTTGCAAAGAAGGATTTCAATCTGGCTAAACACCCTGAGATTGATGTACCCAATCTACAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAGGGAATATGTGCGCGAGACCTTTGCTTGGATGCACTATTACTGGTTCCTCACTAATGATGGCATTGAGTTCCTTAGAAATTATCTCAATCTTCCTTCTGAAATTGTGCCTGCTACTCTGAAGAAACAAGCAAAACCTGCTGGCAGATCATTTGGTGGCCCACCTGGTGATCGTCCAAGAGGTCCTCCTCGCTTTGATGGAGATCGGAGGTTTGGCGACCGGGATGGATATCGTGGAGGTCCCCGGGGACCTGGTGGTGACTTGGGAGAAAAAGGCGGAGCACCTGCTGATTACAGGCCTTCTTTTGGGGGTCCTGGTGGAAGGTCGGGCTTCGGCCGTGGTGCTGGCGGTTATGGAGCACAAGCTAGTTCAAACCTTGGCCAAATGCTATAGACAGGAGTTTCAACATCAGCATCGACTTCGCCTTCGACTGTTCATTTCCATGAAACAAGTGCGGCAATGACGGAAGAAGAATCAGCAGCAGTAGAAAACATAGATGTGCAAGTTGTGAGAGTGGTAGAACAAGCAAAGGAGCTGCAGGAGCTGGTTGCAAACCACATCGCCGAAGCCACAAATGAAGAGCATTCACTCCGCCAACACGCCCTTGCTCTTGATTCTTCTATTCATCGCCTCCGATCGTTGCTCGAGTCTCTCCTCTCTCGACGCTTTCTGAGGATGTTTTTGGGTCCAATTAATGTGCATGCCTCTCGGAAGGATGTCCGCTTGAAGGTTAAAGAGGAATACAACAGTTACAGGGATAGAACTGCCcttctatttcttctcttcccaTCGACGCTGCTTATTCTAAGATCTTGGATTTGGGCTGGGTGCATGCCAGCTTTCCCAGTGCAACTTTACCAGgcGTGGCTTTTATTACTTTACACTGGCTTGGCATTACGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCATGGTGGATATACCATCATTATTGTGCGATGATTATGGCACTTGTGAGTCTCACTTGGGAGATTAAAGGACACGAAGATTGTATGCAAAAACAGAGCGGTGTACGTCTTTTCCTACGGTGGGCTGTAATGCAAGGGGTTGCAATgcttttacaaaataaatatcaacgACAGAGGCTTTATACTCGAATTGCTCTAGGAAAGgCTAAGAGGATGGATGTTGTTTGGGGAGAAACAGCTGGTGTGGATGGCCAACTGTGGTTGTTGTGTCCCATACTTTTCATATTGCAGGGATTTCAAGCATATGTAGGCCTATTGTTGCTCAGGACTGCATTCATTGGAGTTGTTTCTGAGTGGCAGGTAGTATTTTGTGGTGGCCTATTGGTTTTGATGGCTGCGGGGAACTTTCTAAATACAGTACAGACTCTGATGGCAAAGTCAAGATTTAAGGCAAAGATGAGAAGAAGCAAGAGCAAGTA 1568 0.456 MIIPEKNRREICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRNYLNLPSEIVPATLKKQAKPAGRSFGGPPGDRPRGPPRFDGDRRFGDRDGYRGGPRGPGGDLGEKGGAPADYRPSFGGPGGRSGFGRGAGGYGAQASSNLGQMLTGVSTSASTSPSTVHFHETSAAMTEEESAAVENIDVQVVRVVEQAKELQELVANHIAEATNEEHSLRQHALALDSSIHRLRSLLESLLSRRFLRMFLGPINVHASRKDVRLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWAGCMPAFPVQLYQAWLLLLYTGLALRENILRVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGHEDCMQKQSGVRLFLRWAVMQGVAMLLQNKYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFQAYVGLLLLRTAFIGVVSEWQVVFCGGLLVLMAAGNFLNTVQTLMAKSRFKAKMRRSKSK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00001 521 PANTHER TMPIT-LIKE PROTEIN-RELATED 209 267 - -
Bva13g00001 521 MobiDBLite consensus disorder prediction 112 128 - -
Bva13g00001 521 Pfam TMPIT-like protein 196 511 IPR012926 GO:0016021
Bva13g00001 521 PANTHER TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA 209 267 IPR012926 GO:0016021
Bva13g00001 521 PANTHER TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA 269 521 IPR012926 GO:0016021
Bva13g00001 521 Pfam Plectin/S10 domain 3 94 IPR005326 -
Bva13g00001 521 Coils Coil 517 521 - -
Bva13g00001 521 MobiDBLite consensus disorder prediction 93 167 - -
Bva13g00001 521 PANTHER TMPIT-LIKE PROTEIN-RELATED 269 521 - -
Bva13g00001 521 Gene3D - 1 103 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00001 Bva-Chr13 6175 16690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00001 1 153 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 83.117 1.80e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00001 - - vvi:100259865 465.307