Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0537 ATGGGAAGGCAACCATGTTGTGACAAAGTTGGGTTGAAGAAGGGACCATGGACAGCAGAAGAGGACAAGAAGCTCATAAGCTTCCTCCTCACTAATGGCCAATGTTGTTGGAGAGCTGTGCCTAAGCTTGCAGGGCTATTAAGATGTGGAAAAAGTTGCAGGTTAAGGTGGACAAATTATCTTAGGCCAGACTTAAAGAGAGGCCTTCTTTCAGATTACGAGGAGAAAATGGTCATTGACCTTCATGCTCAACTAGGAAACAGATGGTCGAAAATTGCTTCTCATCTGCCAGGAAGAACAGATAATGAGATTAAAAACCATTGGAACACTCACATTAAGAAAAAGCTGAAGAAAATGGGCATTGACCCTGTTACTCACAAGCCACTCTCCAATAATCAACAAATTCAAGAACAGAGCAACCAAACACCTCCTCACAATGTTGACTTTGACCCCAACCATGATGAACTACCTAAAACTCAAGACCAAAACAATCCTAAAGAGGAAGAGAAACCAGATACCATTCCTGAGTCCAAAGAAAGAGAAGAGAAAATGGTTATGATGATGCCACCACCCTTAATTGATGACACAATAATAATGGATGATGAGATTATTATAATCAATGATATCAATGGGTTCTGCACTGATGAGGTACCAATAATAGAACCACATGAGATTCTTGTTCCTTCTTCTGATCCTTCCCCTTCGTCTTCGTCTTCATCTTCGTCCTCGTCCTCGTCTTCTTCTTCTTTTAGTTCAAGTAATAACTTCCTTGAAGACCTTCAGCTCCCAGATTTTGAATGGTGTTGTAACAATGATCATAATGATATTATTATTAACGACGACAATAATGTGGCTTCGTGGAATGATGATGATTTTATTAACTGCTTGAACTCGCTGATAAATGATGATAATGATGATCATGATCATGATCATGATAATGGTGAAAGTAGCAAGCAGCAACAACTAGTGTTTGATGATAATGCTCCTTCTTCTCCACTTTCTCAGTACTCAAACATGGTCATGGATTATTCAGAATCTTCTTGGCCATATGGCTTCTTTTGA 1062 0.3936 MGRQPCCDKVGLKKGPWTAEEDKKLISFLLTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSDYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNNQQIQEQSNQTPPHNVDFDPNHDELPKTQDQNNPKEEEKPDTIPESKEREEKMVMMMPPPLIDDTIIMDDEIIIINDINGFCTDEVPIIEPHEILVPSSDPSPSSSSSSSSSSSSSSSFSSSNNFLEDLQLPDFEWCCNNDHNDIIINDDNNVASWNDDDFINCLNSLINDDNDDHDHDHDNGESSKQQQLVFDDNAPSSPLSQYSNMVMDYSESSWPYGFF* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0537 353 Gene3D - 11 67 - -
Amo17g0537 353 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 295 - -
Amo17g0537 353 SMART sant 13 63 IPR001005 -
Amo17g0537 353 SMART sant 66 114 IPR001005 -
Amo17g0537 353 MobiDBLite consensus disorder prediction 304 329 - -
Amo17g0537 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo17g0537 353 MobiDBLite consensus disorder prediction 225 253 - -
Amo17g0537 353 CDD SANT 16 61 IPR001005 -
Amo17g0537 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo17g0537 353 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo17g0537 353 MobiDBLite consensus disorder prediction 122 184 - -
Amo17g0537 353 MobiDBLite consensus disorder prediction 148 184 - -
Amo17g0537 353 PANTHER MYB TRANSCRIPTION FACTOR 1 295 - -
Amo17g0537 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo17g0537 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo17g0537 353 Gene3D - 71 146 - -
Amo17g0537 353 CDD SANT 74 112 IPR001005 -
Amo17g0537 353 MobiDBLite consensus disorder prediction 126 147 - -
Amo17g0537 353 Pfam Myb-like DNA-binding domain 74 111 IPR001005 -
Amo17g0537 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo17g0537 353 MobiDBLite consensus disorder prediction 229 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0537 Amo-Chr17 10849164 10852075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0537 1 304 MYB Transcription Factor Family AT1G66230 54.984 1.06e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo17g0537 Myb_DNA-binding 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0537 K09422 - gmx:100803624 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0537 17 10849164 10852075 Amo17g0537 17 10849164 10852075 ECH