Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0513 ATGGGAAGAGGCAGAGGAGTTGCGGCTCTGAAACCCACGGCGGAGGTAAACGAATTAGGGCCGATGCCAAGACCGTGGGGAAGATTCGCCGCCGAAATCAGAGACTCGTTGAAGAAAGCAAGGGTTTGGCTCGGAACCTTCGATTCCGCCGAGGACGCCGCCGCAAGAACACTCTGGGGACCAAAAGCCAAGACCAATTTTTCTCGCCGCTCAGGATCCAGCCCTCGATGTAGAACTGCAGCTTCGCCAGCGCCACTTGCTGCGATGGGAGATTCAACCCCTCCGCTGCTGCTCCGCCATCCTGGATGGCAACTTCCTCCTCGAGCAAAGCCGTTTCCTTCATATGCATTTTTTTGTAACTATCTTCAAGGTCAATTTTTTTTAGGCTCATTTATCATTCTTCCATGA 408 0.5294 MGRGRGVAALKPTAEVNELGPMPRPWGRFAAEIRDSLKKARVWLGTFDSAEDAAARTLWGPKAKTNFSRRSGSSPRCRTAASPAPLAAMGDSTPPLLLRHPGWQLPPRAKPFPSYAFFCNYLQGQFFLGSFIILP* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0513 135 CDD AP2 23 67 IPR001471 GO:0003700|GO:0006355
Amo07g0513 135 SUPERFAMILY DNA-binding domain 20 69 IPR016177 GO:0003677
Amo07g0513 135 MobiDBLite consensus disorder prediction 64 88 - -
Amo07g0513 135 Pfam AP2 domain 24 55 IPR001471 GO:0003700|GO:0006355
Amo07g0513 135 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 72 - -
Amo07g0513 135 SMART rav1_2 23 74 IPR001471 GO:0003700|GO:0006355
Amo07g0513 135 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 24 72 - -
Amo07g0513 135 MobiDBLite consensus disorder prediction 64 78 - -
Amo07g0513 135 Gene3D AP2/ERF domain 20 69 IPR036955 GO:0003700|GO:0006355
Amo07g0513 135 ProSiteProfiles AP2/ERF domain profile. 3 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0513 Amo-Chr7 5865966 5867313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0513 1 67 AP2-EREBP Transcription Factor Family AT1G50640 59.036 4.88e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0513 K09286 - mus:103980565 91.2781