Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02791 ATGTCAACCTCTAGAACCTCATCAGATACACTACACACCCCCTCCTTCATGAAGGGATATGAAGAACCAAACAACAACAATCAAAACCAGAACCAAATATGCTTGTCTACACTTCTCCAAAGAAACACATCAACATCATCATCATCATGTGGTGAAAAAAGAGGGAGAAGGAAACAAGCAGAGCCAGGTAGGTTTCTTGGTGTGAGAAGAAGACCTTGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAAAGACATTGGCTTGGTACCTTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAAACCAAGCTAGAACTAACTTCATCTATTCTGATAACATCAACTTCCATGCTCTTCTCACACCTATGGATCTTCAAGCTCTCTTGCCACCACCACCTCCTCCTCCCCCACCATCTTCTCACACCAAACAACTTGCACCTTCCAATCAGAATAAGATTAAGAACAGTAATAGTAACAATAATAGTAATACTAATGTTGTTGCTGCTGCATATGGTTGTTCAGTTCAGGATGATGATAACTTGTTCTTTTCAACAACTGATCATCATAGTAATAACAACAACTCTGGATATCTTGAATGCATAGTTCCTGATAAATGTTTCAGGCCTACTGCTACTACTACTGCTGATTCAAGTTCCAACAGTAGTTGTTCAAATAACAACAACTACTCATCAAGAAAGAGCAATGTCAGTGAAAACTCATCATCATTCTCTTGTGATAATAACTTTCCATCAGACTACTTTTGTTATCCAACAAGTGAAGTAGTTAGTGAAGGGTTCTCATCATGGGATTGGAGCTGCAGTGAGCTTTCAGCTATATTTAACAATTCATCATCATCATCATCATCATCAAGAAGGGTATTAGAAGGAGGAGGATGCATGGATGCACTGTATCCCATCATAACTGATGAGAACAATAATAACAATACAAGCTTCTATGATGGGGTGATGATGAATAATCATCATAATCATAATAATGCTGCTTCATCTTCTTCAACAAACTGCTCAGTAGACATGGGATACCCACTCTTCTGA 1089 0.3939 MSTSRTSSDTLHTPSFMKGYEEPNNNNQNQNQICLSTLLQRNTSTSSSSCGEKRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGNQARTNFIYSDNINFHALLTPMDLQALLPPPPPPPPPSSHTKQLAPSNQNKIKNSNSNNNSNTNVVAAAYGCSVQDDDNLFFSTTDHHSNNNNSGYLECIVPDKCFRPTATTTADSSSNSSCSNNNNYSSRKSNVSENSSSFSCDNNFPSDYFCYPTSEVVSEGFSSWDWSCSELSAIFNNSSSSSSSSRRVLEGGGCMDALYPIITDENNNNNTSFYDGVMMNNHHNHNNAASSSSTNCSVDMGYPLF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02791 362 MobiDBLite consensus disorder prediction 137 173 - -
Aip01g02791 362 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 362 - -
Aip01g02791 362 SUPERFAMILY DNA-binding domain 65 122 IPR016177 GO:0003677
Aip01g02791 362 MobiDBLite consensus disorder prediction 155 173 - -
Aip01g02791 362 MobiDBLite consensus disorder prediction 43 64 - -
Aip01g02791 362 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Aip01g02791 362 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Aip01g02791 362 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Aip01g02791 362 MobiDBLite consensus disorder prediction 138 154 - -
Aip01g02791 362 MobiDBLite consensus disorder prediction 224 243 - -
Aip01g02791 362 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Aip01g02791 362 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Aip01g02791 362 CDD AP2 64 120 IPR001471 GO:0003700|GO:0006355
Aip01g02791 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 10 362 - -
Aip01g02791 362 Pfam AP2 domain 67 113 IPR001471 GO:0003700|GO:0006355
Aip01g02791 362 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02791 Aip-Chr1 129462300 129463487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02791 30 233 AP2-EREBP Transcription Factor Family AT5G18560 44.444 4.51e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip01g02791 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02791 - - aip:110263494 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02791 01 129462300 129463487 Aip10g00157 10 1451757 1452818 PCT