LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g02791	ATGTCAACCTCTAGAACCTCATCAGATACACTACACACCCCCTCCTTCATGAAGGGATATGAAGAACCAAACAACAACAATCAAAACCAGAACCAAATATGCTTGTCTACACTTCTCCAAAGAAACACATCAACATCATCATCATCATGTGGTGAAAAAAGAGGGAGAAGGAAACAAGCAGAGCCAGGTAGGTTTCTTGGTGTGAGAAGAAGACCTTGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAAAGACATTGGCTTGGTACCTTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAAACCAAGCTAGAACTAACTTCATCTATTCTGATAACATCAACTTCCATGCTCTTCTCACACCTATGGATCTTCAAGCTCTCTTGCCACCACCACCTCCTCCTCCCCCACCATCTTCTCACACCAAACAACTTGCACCTTCCAATCAGAATAAGATTAAGAACAGTAATAGTAACAATAATAGTAATACTAATGTTGTTGCTGCTGCATATGGTTGTTCAGTTCAGGATGATGATAACTTGTTCTTTTCAACAACTGATCATCATAGTAATAACAACAACTCTGGATATCTTGAATGCATAGTTCCTGATAAATGTTTCAGGCCTACTGCTACTACTACTGCTGATTCAAGTTCCAACAGTAGTTGTTCAAATAACAACAACTACTCATCAAGAAAGAGCAATGTCAGTGAAAACTCATCATCATTCTCTTGTGATAATAACTTTCCATCAGACTACTTTTGTTATCCAACAAGTGAAGTAGTTAGTGAAGGGTTCTCATCATGGGATTGGAGCTGCAGTGAGCTTTCAGCTATATTTAACAATTCATCATCATCATCATCATCATCAAGAAGGGTATTAGAAGGAGGAGGATGCATGGATGCACTGTATCCCATCATAACTGATGAGAACAATAATAACAATACAAGCTTCTATGATGGGGTGATGATGAATAATCATCATAATCATAATAATGCTGCTTCATCTTCTTCAACAAACTGCTCAGTAGACATGGGATACCCACTCTTCTGA	1089	0.3939	MSTSRTSSDTLHTPSFMKGYEEPNNNNQNQNQICLSTLLQRNTSTSSSSCGEKRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGNQARTNFIYSDNINFHALLTPMDLQALLPPPPPPPPPSSHTKQLAPSNQNKIKNSNSNNNSNTNVVAAAYGCSVQDDDNLFFSTTDHHSNNNNSGYLECIVPDKCFRPTATTTADSSSNSSCSNNNNYSSRKSNVSENSSSFSCDNNFPSDYFCYPTSEVVSEGFSSWDWSCSELSAIFNNSSSSSSSSRRVLEGGGCMDALYPIITDENNNNNTSFYDGVMMNNHHNHNNAASSSSTNCSVDMGYPLF	362

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip01g02791	362	MobiDBLite	consensus disorder prediction	137	173	-	-
Aip01g02791	362	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	10	362	-	-
Aip01g02791	362	SUPERFAMILY	DNA-binding domain	65	122	IPR016177	GO:0003677
Aip01g02791	362	MobiDBLite	consensus disorder prediction	155	173	-	-
Aip01g02791	362	MobiDBLite	consensus disorder prediction	43	64	-	-
Aip01g02791	362	PRINTS	Ethylene responsive element binding protein signature	65	76	IPR001471	GO:0003700\|GO:0006355
Aip01g02791	362	PRINTS	Ethylene responsive element binding protein signature	87	103	IPR001471	GO:0003700\|GO:0006355
Aip01g02791	362	ProSiteProfiles	AP2/ERF domain profile.	64	121	IPR001471	GO:0003700\|GO:0006355
Aip01g02791	362	MobiDBLite	consensus disorder prediction	138	154	-	-
Aip01g02791	362	MobiDBLite	consensus disorder prediction	224	243	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g02791	Aip-Chr1	129462300	129463487	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g02791	30	233	AP2-EREBP Transcription Factor Family	AT5G18560	44.444	4.51e-55	182

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Aip01g02791		AP2	1.7e-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g02791	-		-	aip:110263494	602.823

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip01g02791	01	129462300	129463487	Aip10g00157	10	1451757	1452818	PCT

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