Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0267 ATGATGGATGAAAGGGTAGGTATAGGTGAAATAAAGAAGATGGCTTTTCCAGGAGCAAATGAATCCATGTCAGGAGCAAGTTCACCACAGAGAAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTAACCTTTTGCAAGCGCAGAAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCCAGCCGTGGTCGCCTTTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGATAGGTATAAGAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCCGAGATTAATGCTCAGTATTACCAGCAAGAAGCAGAAAAACTGCGTGCCCAAATTAGTAACCTGCAGAATAACAACAGGCAAATTCTAGGTGAATCATTAAGCAGTATGAATGTGAGGGATCTCAAAAACCTGGAGGGTAAATTAGAGAAAGGAATCAGCAAGATTCGTTCCAAAAAGAACGAGCTGCTGTTTGCTGAAATTGAATACATGCAAAAGAGGGAGATAGATTTGCACAACAACAACCAGCTTCTTCGAGCTAAGATAGCAGAAAGTGAGAGGAACAACATGAGTGTGTTGCCAACTACTGGACCCACAAACTATGATTCAATGCATCAATCTCATGAACAACATCAGCATCAGCATCAGCATCAGCAGCAGCAATTTGATTCTCGTGGCTACTTTCAAGTCACTGGCTTACAACCCAATAGTCAGTATGCACGCCAAGACCAAATGTCACTTCAATTAGTCTAA 816 0.4118 MMDERVGIGEIKKMAFPGANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGAGSASEINAQYYQQEAEKLRAQISNLQNNNRQILGESLSSMNVRDLKNLEGKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNNMSVLPTTGPTNYDSMHQSHEQHQHQHQHQQQQFDSRGYFQVTGLQPNSQYARQDQMSLQLV* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0267 271 MobiDBLite consensus disorder prediction 217 243 - -
Ahy20g0267 271 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Ahy20g0267 271 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Ahy20g0267 271 PANTHER MADS BOX PROTEIN 27 265 - -
Ahy20g0267 271 ProSitePatterns MADS-box domain signature. 35 89 IPR002100 GO:0003677|GO:0046983
Ahy20g0267 271 Gene3D - 45 111 IPR036879 GO:0003677|GO:0046983
Ahy20g0267 271 SUPERFAMILY SRF-like 34 105 IPR036879 GO:0003677|GO:0046983
Ahy20g0267 271 CDD MADS_MEF2_like 34 103 IPR033896 GO:0000977|GO:0045944
Ahy20g0267 271 ProSiteProfiles K-box domain profile. 119 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g0267 271 Pfam K-box region 118 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g0267 271 Coils Coil 119 146 - -
Ahy20g0267 271 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Ahy20g0267 271 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Ahy20g0267 271 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Ahy20g0267 271 Coils Coil 156 176 - -
Ahy20g0267 271 PANTHER AGAMOUSB 27 265 - -
Ahy20g0267 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0267 Ahy-Chr20 2858321 2866144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0267 14 271 MADS-box Gene Family AT3G58780 62.642 2.66e-109 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy20g0267 K-box 4.00E-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0267 K09264 - gmx:732595 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0267 20 2858321 2866144 Ahy20g0267 20 2858321 2866144 ECH
Ahy20g0267 20 2858321 2866144 Ahy10g0079 10 893544 901268 hybridization
Ahy13g4599 13 146363808 146368011 Ahy20g0267 20 2858321 2866144 PCT
Ahy20g0267 20 2858321 2866144 Ahy13g4599 13 146363808 146368011 PCT