Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1099 ATGAGTTTTGGAAGTAGGGGGAAGGTGAAAGACACAAGCTTGATGAGCACATCAGCTGAAAGCAGCATGATGATGAACAACAACAACACAAAGAGGGACAAGGTACTGGCACAGTACAGTGCAGATGCTGAGATTCTTGCAGAGTTTGAGCAGTCTGGTGTGTCTGGAAAATCATTTGACTACTCAAGGATGGTTCTTGATCCTCCACCCAGGTTAGTCTCTGAGCAGAAAATGACTGCATATTTGTCCAAAATCCAAAGGGGTGGCCTCATCCAACCCTTTGGATGCATGTTTGCAATTGAAGAACCCACTTTTAGGATCATTGGGTACAGTGATAACTGCTTTCAATTGTTGGGTTTGGAGAGGCAAAATGAAATTGAGTCCAAGGGTTTGGTTGGGGTTGATGTCACAACCCTTTTCACTCCCCCTTCTGGGGCTTCCCTTGCAAAAGCTGTGGCTTCAAGGGAAATCTCACTCTTGAACCCTATTTGGGTCTATTCAAGGACAACCCAGAAGCCCTTTTATGCCATACTGCATAGGATTGATGTTGGGATTGTGATTGATTTGGAGCCGGCACGGATGAGTGACCCGGCATTGTCGCTTGCCGGGGCGGTCCAGTCACAGAAGCTCGCTGTTAGGGCTATTTCAAGGCTGCAGTCTCTTCCTGGGGAGGATATCGGATTGTTGTGTGACACTGTTGTTGAGGAGGTGCAGAAGCTCACTGGATATGATAGGGTTATGGTTTATAGGTTTCACGAGGACGATCACGGTGAGGTTGTGTCGGAGATTAGGCGGTCCGATTTGGAGCCATACTTGGGCTTGCATTATCCGTCCACGGATATCCCTCAGGCTTCACGGTTCTTGTTCAAGCAGAATCGGGTCCGGATGATTTGCGATTGCCATGCTAAGCCAGTTAAGGTCATTCAGAGTGAAGAGTTGAGGCAGCCTCTTTGCTTGGTGAACTCGACACTCAGGTTGCCACATGGTTGTCACACTCAGTACATGGCCAACATGGGCTCTATTGCCTCTCTTGTGTTGGCAATTATAGTCAATGGAAAGGATGCAACAAGGCTTTGGGGTTTGTTGGTTTGTCATCACACTTCGCCGCGCTACGTGTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTCCAGCTTTACATGGAGATTCAGTTGGCATCACAAATGGCAGAGAAGAGGATTCTCAAAACACAGACTTTACTGTGTGACATGCTCCTTCGAGATGCACCTTTCGGCATTGTTAATCAGTCCCCTAGTATCATGGATCTTGTGGAGTGTGACGGGGCTGCCTTGTATTATGAGGGAAACTGTTGGCTGTTAGGCACAACCCCAACTGAAGCACAGGTGAAAGACATTGCAGATTGGCTACTTAGTAATCATGGGGACTCGACAGGTTTGACAACAGATAGTTTGGCCGATGCCGGTTATCCGGGTGCGGCTTCGCTGGGTGATGCAGTTTGTGGCATGGCCACGGCACGAATCAATTCGAAACATTTCTTGTTCTGGTTCAGGTCCCACACTGCTAAGGAAGTGAAATGGGGGGGAGCCAAGCACCATCCAGAGGATAAGGATGATGGAGGAAAAATGAACCCAAGATCATCATTTAAAGCTTTTCTCGAAGTAGTCAAAAGCCAAAGTTTGCCGTGGGAAGTGTCAGAAATCAATGCCATTCACTCATTACAACTAATAATAAGAGAATCATTCCAAGACACAGAGAACACTGGTCCAAAGGCTTTAACTTATGTACAGAAAAGTGACACTGCAACCAAAGGGATGGATGAACTCAGTTCGGTAGCACTTGAAATGGTGAGATTAATTGAGACGGCAACAGTCCCTATTTTTGGGGTTGATTCGGGTGGTGTAATCAATGGTTGGAATTCAAAAATCGCTGAATTGACAGGTCTACAGACCAGTGAAGCTATGGGAAAATCCCTGTTAAATGAAATTATACACGCAGACTCTTGTGACACTTTTAAAAACACTCTAAGCAGAGCCTTGCAAGGTCAAGAGGACAAAAATGTTGAGTTGAAAATAAAACACTTCGGGCTTCATCGACAAGAGGAAATTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATGCTATTGTTGGGGTATGCTTTGTAGGTCAAGACATCACTTATGAGAAAGTGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCTATCATCCAGAGTCTGAGTCCGCTGATTCCACCGATATTTTCTTCTGATGAGAATGCCTGCTGCAGTGAATGGAATGGAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAATCATAGGAAAATTGCTTCCTGGTGAAATATTTGGAAGCTTTTGTCGATTAAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTATACCATGGAATAAGCGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAATTTATGGAGACTTATATAACAGCAAACAAGAGAGTTGATGCTGGTGGGAATATGCTTGGCTGTTTCTGCTTCTTGCAGATTGTAACGCCAGACTTGAATCAACCCTCTGAAGAACACAAGCCTAGAGGCAGGGAAAGCATTTCTGAATCTAAAGAGTTGGCATATATACTACAAGAGATGAAGAAACCTTTAAACGGTATACGATTCACTCACAAACTTTTGGAAAACACAACTGTCTCGGAAAACCAAAAACAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCATGGCAATTATTGAGGATACAAACTTAGGAAGTATTAATGAAGGCACTTTGCAGCTAAACATGGAAGAGTTTGTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGCTGTTGATAAGAGAAAAGAACTTGCAACTGTATCATGAAATTCCTGATGAAATCAAAATGCTTTCTCTATATGGTGACCAAATTAGGCTTCAGGTGGTCTTGTCCGACTTTTTGCTTAATGTAGTCAACCATACACCATCTCCAAATGGCTGGGTAGAAATCAAAATTTCACCCGGTTTAAAGATAATACAGGATGGCAACGAGTTTATCCATTTGAAGTTCAGAATGACTCATTCTGGTCAAGGTATTCCTTCCAATGTTCTTCATGACATGTTTGAAGGAGGTAATCAATGGACTACACAGGAAGGTCTAGGACTCTACATGTCCAGGAAAATCCTCAGTAGGATGAGTGGTCATGTCCACTACGTTAGAGAACAAAATAAGTGTTATTTTCTCATTGATCTTGAGATTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCATGCAGAGACAAGCATGTTGTTAAGTTAG 3387 0.4319 MSFGSRGKVKDTSLMSTSAESSMMMNNNNTKRDKVLAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPPRLVSEQKMTAYLSKIQRGGLIQPFGCMFAIEEPTFRIIGYSDNCFQLLGLERQNEIESKGLVGVDVTTLFTPPSGASLAKAVASREISLLNPIWVYSRTTQKPFYAILHRIDVGIVIDLEPARMSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYRFHEDDHGEVVSEIRRSDLEPYLGLHYPSTDIPQASRFLFKQNRVRMICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVLAIIVNGKDATRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPFGIVNQSPSIMDLVECDGAALYYEGNCWLLGTTPTEAQVKDIADWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSQSLPWEVSEINAIHSLQLIIRESFQDTENTGPKALTYVQKSDTATKGMDELSSVALEMVRLIETATVPIFGVDSGGVINGWNSKIAELTGLQTSEAMGKSLLNEIIHADSCDTFKNTLSRALQGQEDKNVELKIKHFGLHRQEEIVYLMVNACTSRDYTDAIVGVCFVGQDITYEKVVQDKFIKLEGDYKAIIQSLSPLIPPIFSSDENACCSEWNGAMERLTGWKRDEIIGKLLPGEIFGSFCRLKGQDTLTNFMILLYHGISGQDSEKLPFGFFDRNGEFMETYITANKRVDAGGNMLGCFCFLQIVTPDLNQPSEEHKPRGRESISESKELAYILQEMKKPLNGIRFTHKLLENTTVSENQKQFLDTSDACERQIMAIIEDTNLGSINEGTLQLNMEEFVLGNILDAIVSQVMLLIREKNLQLYHEIPDEIKMLSLYGDQIRLQVVLSDFLLNVVNHTPSPNGWVEIKISPGLKIIQDGNEFIHLKFRMTHSGQGIPSNVLHDMFEGGNQWTTQEGLGLYMSRKILSRMSGHVHYVREQNKCYFLIDLEIRTRKERQRNLHAETSMLLS 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1099 1128 SUPERFAMILY GAF domain-like 205 391 - -
Aed4g1099 1128 Pfam Phytochrome region 408 583 IPR013515 GO:0006355|GO:0009584
Aed4g1099 1128 Pfam His Kinase A (phospho-acceptor) domain 887 948 IPR003661 GO:0000155|GO:0007165
Aed4g1099 1128 Gene3D - 928 1103 IPR036890 -
Aed4g1099 1128 PANTHER PHYTOCHROME E 31 1116 - -
Aed4g1099 1128 SMART gaf_1 225 405 IPR003018 GO:0005515
Aed4g1099 1128 Pfam GAF domain 225 395 IPR003018 GO:0005515
Aed4g1099 1128 Coils Coil 671 691 - -
Aed4g1099 1128 Pfam PAS fold 80 192 IPR013654 GO:0006355
Aed4g1099 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 616 724 IPR035965 -
Aed4g1099 1128 SMART pas_2 612 679 IPR000014 -
Aed4g1099 1128 SMART pas_2 743 813 IPR000014 -
Aed4g1099 1128 CDD PAS 755 863 IPR000014 -
Aed4g1099 1128 ProSiteProfiles PAS repeat profile. 744 789 IPR000014 -
Aed4g1099 1128 SUPERFAMILY GAF domain-like 403 581 - -
Aed4g1099 1128 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 997 1098 IPR003594 -
Aed4g1099 1128 ProSiteProfiles Histidine kinase domain profile. 892 1111 IPR005467 -
Aed4g1099 1128 CDD HisKA 885 940 IPR003661 GO:0000155|GO:0007165
Aed4g1099 1128 Gene3D - 400 573 IPR043150 -
Aed4g1099 1128 TIGRFAM sensory_box: PAS domain S-box protein 617 735 IPR000014 -
Aed4g1099 1128 PRINTS Phytochrome signature 140 162 IPR001294 GO:0006355|GO:0009584
Aed4g1099 1128 PRINTS Phytochrome signature 613 629 IPR001294 GO:0006355|GO:0009584
Aed4g1099 1128 PRINTS Phytochrome signature 240 259 IPR001294 GO:0006355|GO:0009584
Aed4g1099 1128 PRINTS Phytochrome signature 325 346 IPR001294 GO:0006355|GO:0009584
Aed4g1099 1128 PRINTS Phytochrome signature 425 445 IPR001294 GO:0006355|GO:0009584
Aed4g1099 1128 PRINTS Phytochrome signature 726 746 IPR001294 GO:0006355|GO:0009584
Aed4g1099 1128 PRINTS Phytochrome signature 543 561 IPR001294 GO:0006355|GO:0009584
Aed4g1099 1128 PRINTS Phytochrome signature 706 723 IPR001294 GO:0006355|GO:0009584
Aed4g1099 1128 PRINTS Phytochrome signature 632 647 IPR001294 GO:0006355|GO:0009584
Aed4g1099 1128 PRINTS Phytochrome signature 510 529 IPR001294 GO:0006355|GO:0009584
Aed4g1099 1128 CDD HATPase_Phy-like 996 1109 IPR044767 -
Aed4g1099 1128 Pfam PAS fold 613 728 IPR013767 GO:0006355
Aed4g1099 1128 Pfam PAS fold 744 863 IPR013767 GO:0006355
Aed4g1099 1128 Gene3D - 206 556 IPR029016 -
Aed4g1099 1128 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 953 1103 IPR036890 -
Aed4g1099 1128 PIRSF Phytochrome_conventional 12 1118 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Aed4g1099 1128 PANTHER TWO-COMPONENT HISTIDINE KINASE 31 1116 - -
Aed4g1099 1128 ProSiteProfiles PAS repeat profile. 610 681 IPR000014 -
Aed4g1099 1128 SMART HisKA_10 885 950 IPR003661 GO:0000155|GO:0007165
Aed4g1099 1128 Gene3D PAS domain 757 868 - -
Aed4g1099 1128 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 225 385 IPR016132 -
Aed4g1099 1128 Gene3D PAS domain 84 328 - -
Aed4g1099 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 758 860 IPR035965 -
Aed4g1099 1128 ProSiteProfiles PAC domain profile. 684 740 IPR000700 -
Aed4g1099 1128 CDD PAS 621 728 IPR000014 -
Aed4g1099 1128 SMART HKATPase_4 997 1111 IPR003594 -
Aed4g1099 1128 Gene3D PAS domain 611 732 - -
Aed4g1099 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 192 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1099 Aed-Chr4 10313157 10320422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1099 15 1111 Histidine Kinase Gene Family AT4G18130 63.120 0.0 1474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1099 K12123 - gmx:100808192 2080.83