Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01786 ATGAAAATAGAGGAAGATCAAGGACAGTGTTCATCATCTTCTCAAGCCATCAATAACATTCAAAGCTATCAAGAACAGCTTCTTCTTCACCAAATGATGCAGCAGCAGCAAAACGCCGGCGTTTTGGGAGGTAATTCTTCTAATAATAATAATAACGACAGCGAAAGAGGACTGGTGTTCCCTGAGGTTTCTCCAATCTTTCATCCTCCGCCGCCATCACAGCCGCCATGGTCTCTCCCTCCGGTTCACTCCTTCAACCCGGTCCGAGACACCGACCACCACCACCACCAGTTTTTAGCCCCTCCACCTTCCTCTTCTCTCTACGCCGGCCTCTTCAACCGGATGGTTAATCCTTCTCTGCAATTCGCTTACGACGGTCCTTCCAATTCCGACCAACACCATCTCCGGATCATCTCTGACACCCTCGGGGTCGGACCGGTCGCGGGACAATCCGGTTCAGTAGCCCCCTTCGGCCTCCAAGCCGAGCTGGTGGGCAAGATCACGGCTCAAGAAATCATGGACGCTAAGGCCCTCGCGGCTTCAAAGAGCCACAGCGAAGCCGAGAGAAGACGCCGAGAGAGAATCAACAACCACCTCGCCAAGCTTCGAAGTTTATTGCCCAACACAACCAAAACAGATAAAGCTTCGTTATTAGCCGAAGTAATCCAGCATGTGAAGGAGCTAAAGCGTCAAACTTCAATAATAGCAGAAACAACCCCTGTGCCTACGGAAACCGACGAGTTGACGGTGGACGACGCTTCCGATGAGGACGGCCGGTTCGTGATCAGAGCCTCGATTTGCTGCGAAGACAGGTCCGATCTCTTGCCGGACCTCATCAAGACGCTGAAGGTCCTAGGGTTGAGAACTGTCAAGGCGGAGATCACCACGCTCGGCGGACGAGTTAAGAACGTCTTGTTCGTCACCGGCGAAGAAGACGAGTCGGGCGGTGGCGATCAACAGCATTGTATAAGCTCCATACAAGAGGCTTTGAAGGCAGTGATGGACAAGAATGGTGGAGGTGGTGATGAAAATGGGAATGTTAAGAGGCAAAGAACTAATAATAATATCAATATCCTTGAACAAAACAGGTCTTTATGA 1098 0.5091 MKIEEDQGQCSSSSQAINNIQSYQEQLLLHQMMQQQQNAGVLGGNSSNNNNNDSERGLVFPEVSPIFHPPPPSQPPWSLPPVHSFNPVRDTDHHHHQFLAPPPSSSLYAGLFNRMVNPSLQFAYDGPSNSDQHHLRIISDTLGVGPVAGQSGSVAPFGLQAELVGKITAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSIIAETTPVPTETDELTVDDASDEDGRFVIRASICCEDRSDLLPDLIKTLKVLGLRTVKAEITTLGGRVKNVLFVTGEEDESGGGDQQHCISSIQEALKAVMDKNGGGGDENGNVKRQRTNNNINILEQNRSL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01786 365 Pfam Helix-loop-helix DNA-binding domain 182 228 IPR011598 GO:0046983
Accr9g01786 365 SMART finulus 185 234 IPR011598 GO:0046983
Accr9g01786 365 CDD bHLH_AtAIG1_like 174 251 - -
Accr9g01786 365 MobiDBLite consensus disorder prediction 40 57 - -
Accr9g01786 365 Gene3D - 174 235 IPR036638 GO:0046983
Accr9g01786 365 PANTHER TRANSCRIPTION FACTOR BHLH30 50 358 IPR045847 GO:0003700|GO:0006355
Accr9g01786 365 Coils Coil 349 365 - -
Accr9g01786 365 MobiDBLite consensus disorder prediction 40 75 - -
Accr9g01786 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Accr9g01786 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 235 IPR036638 GO:0046983
Accr9g01786 365 FunFam transcription factor bHLH30 174 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01786 Accr-Chr9 38875265 38877953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01786 13 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.172 7.65e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr9g01786 HLH 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01786 - - pcin:129322869 508.064