Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00459 ATGCTTCCTTTCAGGAGTTTCTATGGGTTTGAGAGCTGGTTAGATCAGAGTGCGTGTTCTCAGGAACCCAGCTCCTCCATCAAGTCCGTGGAATCGGATAAAGCGAAGCCAATTCTGAAATCCATATCAAAGTCTGAGAGGAAATCAATGGAAGCCTGCAAGAGCCATAGGGAAGCAGAGAGGAGACGCAGGCAGCGAATCAACACGCACCTCTCAACTCTACGTTCTCTCCTACCTAACGCCGTAAAGTCGGATAAGGCCTCGTTACTGGCGGAGGTGGTCCGACACGTCAAAGACCTGAGGAAACAGGCCGATGACGTGGCGCGCCATCACGACGGAGATTTGTCGGGAAGAACTATCAGCGGAGAATCCGGGTTGGATCCCGGGGACTCGGAGCAGTGGGCGTTCCCGGGAGAGTCGGACGAGGCAACTGTGAGTTACTGCGACGGTGTAGGGAAGAGGAAACTCATGAAAGCCACGCTCTGCTGCGAGGACCGGCCCAACCTGAACCGAGATCTAGAGGAGGCGATCCGGTCGGTTCGGGCTAAGGCGGTGCGAGCCGAGATGGTGACCATTGGTGGGCGGACCAAGAGCGTAGTGATTGTCCAGTGGACTGGTGGAGAGGAGGAGGAGGAGGAAGATGAGGTTGGGGCGCTGGAACGGGCTTTGACGGCTGTCGTAGAGAATCGGGCCCTCGTTGGGCCTATACTGGGCCGAATGTCATCGGGTCACAAACGGGCCAGGCATCGTTAG 753 0.5671 MLPFRSFYGFESWLDQSACSQEPSSSIKSVESDKAKPILKSISKSERKSMEACKSHREAERRRRQRINTHLSTLRSLLPNAVKSDKASLLAEVVRHVKDLRKQADDVARHHDGDLSGRTISGESGLDPGDSEQWAFPGESDEATVSYCDGVGKRKLMKATLCCEDRPNLNRDLEEAIRSVRAKAVRAEMVTIGGRTKSVVIVQWTGGEEEEEEDEVGALERALTAVVENRALVGPILGRMSSGHKRARHR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00459 250 Gene3D - 45 112 IPR036638 GO:0046983
Accr3g00459 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Accr3g00459 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 108 IPR036638 GO:0046983
Accr3g00459 250 Coils Coil 170 190 - -
Accr3g00459 250 MobiDBLite consensus disorder prediction 24 62 - -
Accr3g00459 250 SMART finulus 57 106 IPR011598 GO:0046983
Accr3g00459 250 MobiDBLite consensus disorder prediction 109 128 - -
Accr3g00459 250 MobiDBLite consensus disorder prediction 33 62 - -
Accr3g00459 250 PANTHER TRANSCRIPTION FACTOR BHLH30 32 248 IPR045847 GO:0003700|GO:0006355
Accr3g00459 250 Pfam Helix-loop-helix DNA-binding domain 53 100 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00459 Accr-Chr3 5072426 5073273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00459 48 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.316 1.14e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr3g00459 HLH 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00459 - - gmx:100816394 271.166