Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00144 ATGGATAGCAACTTGCCTCCGCCTGAACAATCTTCTGATTCTTCGCCTTCTTCTGCTGTTTCTCCTTCGGTTTTACAAGTTCCTTCTTCTCATGAGTCGTCTTTATTGTCTCCGAGGACGGCGAGATCGCCGTCGTCTTCGGGTCAGCATACCAGCAGGAGGCACGCCACTTTCCGGGGAATCCGGAGCCGGAGCGGGAAATGGGTGTCGGAGATAAGGGAGCCTCGTAAATCCACGCGCATTTGGCTGGGTACGTACCCGACGCCGGAGATGGCAGCCGCTGCGTATGACGTGGCGGTGCTTGCATTGAAAGGGCCTGACACTGCCCTCAATTTCCCCAACTTGATCCTCTCTTACCCGATCCCGGCGTCATTGTCGGCCAACGATATTCGGGCTGCAGCATCAGCTGCGGCCGAGGCGAAGCTGGTGAGGTCTACGGAAAGCGGCGGACAAGACGCCGGAGGCGAAGGAGGAAACCAAGGCGATGGCTGGAGCCGAAGCGGCGGAGAAGTTGCAACGACGGAGAAAAACGAGGAATTTATTGATGAGGACGAGCTATTGAATATGCCGAGTTTGCTGGATGACATGGCGAGGGGAATGCAGGTAAGTCCGCCGAGGATGAAGTCACCGGACGCTTCCGATGATTCGCCGCCGAATTCAGATCATGGAGATAGCCTCTGGAGTTTTTGA 690 0.5609 MDSNLPPPEQSSDSSPSSAVSPSVLQVPSSHESSLLSPRTARSPSSSGQHTSRRHATFRGIRSRSGKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAVLALKGPDTALNFPNLILSYPIPASLSANDIRAAASAAAEAKLVRSTESGGQDAGGEGGNQGDGWSRSGGEVATTEKNEEFIDEDELLNMPSLLDDMARGMQVSPPRMKSPDASDDSPPNSDHGDSLWSF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00144 229 MobiDBLite consensus disorder prediction 1 58 - -
Accr1g00144 229 Gene3D AP2/ERF domain 57 114 IPR036955 GO:0003700|GO:0006355
Accr1g00144 229 SMART rav1_2 57 119 IPR001471 GO:0003700|GO:0006355
Accr1g00144 229 MobiDBLite consensus disorder prediction 1 54 - -
Accr1g00144 229 SUPERFAMILY DNA-binding domain 58 114 IPR016177 GO:0003677
Accr1g00144 229 ProSiteProfiles AP2/ERF domain profile. 57 113 IPR001471 GO:0003700|GO:0006355
Accr1g00144 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 228 IPR045277 GO:0003700
Accr1g00144 229 MobiDBLite consensus disorder prediction 145 229 - -
Accr1g00144 229 MobiDBLite consensus disorder prediction 213 229 - -
Accr1g00144 229 CDD AP2 58 115 IPR001471 GO:0003700|GO:0006355
Accr1g00144 229 Pfam AP2 domain 59 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00144 Accr-Chr1 2865365 2866054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00144 52 229 AP2-EREBP Transcription Factor Family AT5G52020 58.659 4.82e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr1g00144 AP2 1.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00144 - - pcin:129293795 313.538