LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g00160	ATGGAGCCAGCATCTGCGGATTCATCATCTCAAGCTACCAACTCAGCTCCTGATATTGAGCATCATTCCACCAATGTTTCCGGACAAAATGACAATGCCCATGACTCTTCACCCTCCTTATCGGCTACTGACAAATCATCCTCAGTGATTAATCTGAAATTTCCACAGTCCTTTGGAGCAACACAAGGGAACTCGCAGACTGGAGATACTGGGATGTCGAATTTTTCTTTCCTTACCAGTGGACTTGGACGAATACTATCAATTCCTTCTGTTCGAAATGAGACTGCTCCTGCCAACTTAGAAGCTGAGAAGCCTACTTTAATTGAATCGTTCACCAAAGGGTTAGTTGACTCTTCAAAGACTGCAGTAAAGAAGATGCAAGTAACGGCACGCCATATTGTCTCTCAAAACAAACGCAGATACCAGGATGGAGAGTTCGACTTGGATCTGGCATACATTACTGAAAATATAATTGCTATGGGATTTCCAGCTGGTGATTCCAGCTCTGGTGTCTTCGGATATATTGAGGGTTTCTATCGCAATCACATGGAAGAAGTGATTAGATTTCTCGAGACTCGTCATGAGGGAAAGTACAAAGTATACAATATTTGCTCTGAGAGGTTGTATGATGCATCACTATTCAAGGGGAAGGCCGCAAGTTTCCCATTTGATGATCATAATTGCCCTCCTATTGAACTTTTAGCATCCTTTTGTAGAAGTGCATATTCATGGTTAAAGGAGGATATTCAAAATGTGATAGTTGTTCATTGCAAAGCTGGCATGGGGAGGACAGGGGTGATGATTTGTAGCCTTCTTTTGTTTCTTAAGTTCTTCCCAACTGCTGAGGAGGCCATTAATTTCTTTAACCAGAAAAGATGCATTGATGGAAAAGCTCTAGTTCTTCCCAGTCAGATTAGGTATGTCAAATACTTTGAACGGACTTTAACATACTTCAAAGGAGAAGTTCAGCCTGGACGAAGGTGCATGCTAAGAGGATTTCGGCTTCACAAATGCCCTTATTGGATTAGGCCTTCCATTACGATTTCCGATCATAACGGAATTCTTTTCACCACAAAAAAGCATCCAAAAACAAAGGATCTGATGCCCGAAGATTTTTGGATCAGTGCTCCGAAGAAAGGAATTGTGGTATTTGCATTACCTGGGGAGCCTGGTCTAACAGAGTTGACCGGGGACTTCAAAATTCATTTTCATGATGGACAGGGAGATTTCTACTGTTGGTTAAATACAACCATGACGGAAAACAGAAAAATCTTGGACGCCTCGGATCTTGATGGTTTTGACAAGAGAAAGATCCCTGCTCCAGGATTTCAGGTCGAAGTAGTAATGGCAGACTATGACGGCACCCTACCTGCGTGGACAAAAGCCAATCCTGCCAGCAAAGGATCTAGTGGTAACACAGGCAATGTCGCAGCCTCAGATGCAAGGCCGGCCTCTGATTCAAGAAAGAGTAAGGCCCCTACAAACGGGGATGATAATGTATTCTCAGATAGTGAAGGCGAGGACACCCAAGATTCAGAGAGCAGGGAATCTAAAGCTGCATCTGATCTCAGATACGGGGAAGGTCATCAAACTTCTGATGCCACTAAAGACCATGTTGGAGCCTTGACCTCAAGGACAAAGCAGCTGTCACTTCAGCGTCAAGAACGTATACAAAATAATGCTTCTGACGAAGGATCAAATAGTCCAAAAATCCAGAAAACTCCCAGGACCCCTAAAAGGGAGTACTCTGGGGAAAATGAGATCAAGGCCATGGCAGCGGATGCTTCAGTTTTTTCTTTCGGAGATGATGAAGATTTTGAAAGTGACTGA	1830	0.4339	MEPASADSSSQATNSAPDIEHHSTNVSGQNDNAHDSSPSLSATDKSSSVINLKFPQSFGATQGNSQTGDTGMSNFSFLTSGLGRILSIPSVRNETAPANLEAEKPTLIESFTKGLVDSSKTAVKKMQVTARHIVSQNKRRYQDGEFDLDLAYITENIIAMGFPAGDSSSGVFGYIEGFYRNHMEEVIRFLETRHEGKYKVYNICSERLYDASLFKGKAASFPFDDHNCPPIELLASFCRSAYSWLKEDIQNVIVVHCKAGMGRTGVMICSLLLFLKFFPTAEEAINFFNQKRCIDGKALVLPSQIRYVKYFERTLTYFKGEVQPGRRCMLRGFRLHKCPYWIRPSITISDHNGILFTTKKHPKTKDLMPEDFWISAPKKGIVVFALPGEPGLTELTGDFKIHFHDGQGDFYCWLNTTMTENRKILDASDLDGFDKRKIPAPGFQVEVVMADYDGTLPAWTKANPASKGSSGNTGNVAASDARPASDSRKSKAPTNGDDNVFSDSEGEDTQDSESRESKAASDLRYGEGHQTSDATKDHVGALTSRTKQLSLQRQERIQNNASDEGSNSPKIQKTPRTPKREYSGENEIKAMAADASVFSFGDDEDFESD	609

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g00160	609	MobiDBLite	consensus disorder prediction	463	585	-	-
	Accr10g00160	609	MobiDBLite	consensus disorder prediction	511	534	-	-
	Accr10g00160	609	PANTHER	PHOSPHATASE WITH HOMOLOGY TO TENSIN	116	564	-	-
	Accr10g00160	609	FunFam	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2	124	321	-	-
	Accr10g00160	609	Pfam	Protein-tyrosine phosphatase	225	277	IPR000242	GO:0004725\|GO:0006470
	Accr10g00160	609	MobiDBLite	consensus disorder prediction	1	46	-	-
	Accr10g00160	609	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	152	319	IPR029021	-
	Accr10g00160	609	ProSitePatterns	Tyrosine specific protein phosphatases active site.	255	265	IPR016130	GO:0016311\|GO:0016791
	Accr10g00160	609	ProSiteProfiles	Phosphatase tensin-type domain profile.	139	318	IPR029023	-
	Accr10g00160	609	MobiDBLite	consensus disorder prediction	536	573	-	-
	Accr10g00160	609	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	253	292	IPR000387	GO:0016311\|GO:0016791
	Accr10g00160	609	SMART	PTEN_C2_2	323	451	IPR014020	-
	Accr10g00160	609	CDD	PTP_PTEN	149	313	IPR045101	GO:0016791
	Accr10g00160	609	Gene3D	Protein tyrosine phosphatase superfamily	124	321	IPR029021	-
	Accr10g00160	609	ProSiteProfiles	C2 tensin-type domain profile.	325	452	IPR014020	-
	Accr10g00160	609	MobiDBLite	consensus disorder prediction	463	480	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g00160	Accr-Chr10	2803149	2811077	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g00160	27	609	Protein tyrosine phosphatase (PTP) family	AT3G19420	61.436	0.0	738

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr10g00160	K01110		-	gmx:100801622	850.892