Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0898 ATGGCTGCGCTGCTGAGAAAGGTTTGGGAATCGGTTTCGAGAAGTTCAAAGGCGACCTCTGAATCGTCTGATCGGCGCGTGGTGGTTCAGTCGTCGACGGGCGCATTCAGTCACATACCTTTCGATGTCTTCATGCATATTCTCCAGTTTCTCGAGCCCAGGGAAGTTGCGAAGTTGAGCCTTGTTTGCAAGTATTGGAAATTTCTCGTTTCCGATAATCAACTCTGGCTTTACTTGCTCCAGAAGGAACAGAACCAACCCGGTTCTTGGGATTCACTTGTTTTCGCCGAGACCCATTTGCAGATGGGCTACCCTCTTCTGACATTCAATGATCAGATGCCCCAGTTATCTTTCATGCATATTTTTGGCCGACGAGCAAAAGCCCCGGGCGCTATTATTATTGATGGTGGGTCTGGCTATTGCAAGTATGGATGGAGCAAATATGATACTACCACCGGGATGTCGGCAACATTTTTAGAATTTGGAAACATTGAAACGCCAATATACTCCAGGCTTAGACATTTTTTGGCAACGATTTATAGCAGAATGCACGTGAAGCCATCTGCACAACCAATTGTCTTATCTGTTCCAATCTGCCATTATGACGATAATGAATCTGCTAAAGCATCTCGAAGGCAGCTAAAGGAAACCATTCATTCAGTCTTGTTTGATATGAACGTTCCTGCTGTTTGTGCCATCAACCAGGCAACCTTAGCTTTGTATGCAGCAAAGCAAACTTCAGGAATTGTTGTTAATATTGGTTTCCACTGCACATCTATTGTTCCAATTTTACATGGAAAAGTGATGCGCAAGGTGGGTGTGGAAGTTGTGGGAATGGGAGGATTGAAACTCACTGGATTTCTCAGGGAGCGGATGCAGCAGCAAAATATGAACTTTGAGTCACTTTACACTGTTCGCTCACTGAAAGAGAATCTGTGTTATGTTGCTGCTGACTATGAAGCTGAGCTATCCAAAGATACACGGGCATCATTTCAAGTTGCATCAGAAGGTTGGTTTACTCTTTCGAGGGAGCGCTTTCAAACAGGAGAGATACTATTCCAGCCAAGAATGGCAGGAGTCACAATGATGGGTTTGCACCAGGCAGTAGCACATTGCATGGACCATTGCCAATCTGCTGCAATAACAGCTGATGAATCTTGGTTCAAGACTGTAGTCTTAGCAGGAGGAAGTGCATGTTTACCAGGACTAGCAGAAAGGTTAGAAAAGGAACTGCATGGACTTGTTTGCCCATCTGTAGCCAATGGCATTAGAGTCCTCCCTCCTCCTTATGGTGAAAAATCTGCATGGTTTGGGGCAAAGATTATCAGCAATTTGAGCACCTTCCCTGGGAGTTGGTGTATGACAAAGAAGCAGTTCCGACCCAAGGTGAGACGCAACCTCATGGTGACAATATTTAACTAG 1422 0.4508 MAALLRKVWESVSRSSKATSESSDRRVVVQSSTGAFSHIPFDVFMHILQFLEPREVAKLSLVCKYWKFLVSDNQLWLYLLQKEQNQPGSWDSLVFAETHLQMGYPLLTFNDQMPQLSFMHIFGRRAKAPGAIIIDGGSGYCKYGWSKYDTTTGMSATFLEFGNIETPIYSRLRHFLATIYSRMHVKPSAQPIVLSVPICHYDDNESAKASRRQLKETIHSVLFDMNVPAVCAINQATLALYAAKQTSGIVVNIGFHCTSIVPILHGKVMRKVGVEVVGMGGLKLTGFLRERMQQQNMNFESLYTVRSLKENLCYVAADYEAELSKDTRASFQVASEGWFTLSRERFQTGEILFQPRMAGVTMMGLHQAVAHCMDHCQSAAITADESWFKTVVLAGGSACLPGLAERLEKELHGLVCPSVANGIRVLPPPYGEKSAWFGAKIISNLSTFPGSWCMTKKQFRPKVRRNLMVTIFN* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0898 473 ProSiteProfiles F-box domain profile. 33 79 IPR001810 GO:0005515
Vvi19g0898 473 SUPERFAMILY Actin-like ATPase domain 246 458 IPR043129 -
Vvi19g0898 473 SUPERFAMILY Actin-like ATPase domain 130 251 IPR043129 -
Vvi19g0898 473 CDD NBD_sugar-kinase_HSP70_actin 132 268 - -
Vvi19g0898 473 Gene3D - 236 434 - -
Vvi19g0898 473 Pfam F-box-like 36 76 IPR001810 GO:0005515
Vvi19g0898 473 CDD F-box_AtARP8-like 35 79 - -
Vvi19g0898 473 Gene3D - 171 459 - -
Vvi19g0898 473 Gene3D - 24 104 - -
Vvi19g0898 473 Gene3D Actin; Chain A, domain 4 279 362 - -
Vvi19g0898 473 PANTHER ACTIN 171 459 IPR004000 -
Vvi19g0898 473 SMART actin_3 129 468 IPR004000 -
Vvi19g0898 473 SMART fbox_2 39 79 IPR001810 GO:0005515
Vvi19g0898 473 Pfam Actin 178 458 IPR004000 -
Vvi19g0898 473 SUPERFAMILY F-box domain 27 93 IPR036047 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0898 178 452 Miscellaneous Gene Families AT3G53750 30.526 1.03e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0898 K16616 - vvi:100254870 958.747