Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0893 ATGGCGATTTCCTCTTCCTTCCGATTATTCTCAGCCAAAATCCCGCAATCTCTGCATCTTCCCTATCTCTCACTCTCCAAAACCCTAATTTCGTCCACCTCAATTCTCCCAAGATTTTCATTTTTCCGACCGATTTCCATCTCATTTCAGAGGGTTCCTACCAAACCCTCATCCTCATCATCGTCGCCCTCTTTGACCTCCGCTTCTCTGCAACCCATTGAAGACCTCCCTCCAAAGCTTCAAGAAATCGTCAAACTCTTCCAAGCAGTGGAAGAGCCCAAGGCTAAGTACCAACAGCTCTTGTTCTACGGCAAAAACCTCACCCCACTTGATGCCCAGTACAAGACCACTGAAAACAAGGTTCAGGGATGTGTTTCTCAGGTCTGGGTCCGTGCCTACCTTGATTCGGATAAGAACGTGGTCTTTGAAGCTGATTCTGACTCGGTGCTCACCAAGGGGCTCGCGGCTTTGCTCGTTCAGGGACTTTCGGGCAGGCCGGTTGAGGAGGTTGTGCGGGTCTCGCCCGATTTTGTGGTCTTGCTTGGGTTGCAGCAGAGTCTCACACCTTCGAGGAATAATGGGTTCTTGAATATGTTGAAGTTGATGCAGAAAAAGGCGCTGGAGCTTTATATAGAAGCTAAAAGGAGCAGTGAGTTAACGGGTGTTGAGGATCCGAAAGTGGGTGTGGCTGGGACCGGTGAAACTGGGTTGAATTCAAATGTCGAAAAGCCAGTTAGGACCTCGAATTTGAGCTCTAAAATTGGTGGTATTGAAGATTCCGTTGTTAGATTGAGTTCTGAAGTGAGTGGTCGAGATTCAAATCTGGGAGGGGGTGCAACCAGTGAAACTGCTTTAGGGAGTAGGGGAGGGAGAATTAAAGAGATATTGGAGAGAGCTCTTAGTCCTATTGAATTGCTGGTAGAGGATATATCTTATCAGCATGCTGGACATGCAGGTGTTAGGGGAAGTGATGGGGAGACACATTTTAATCTCAAGGTAGTTTCAGAGGAATTCGAAGGGAAGAGTTTGGTTAAGAGGCATAGAGTTGTTTATGATTTGTTGCAAGAGGAGTTGCAGAATGGACTACATGCATTGTCAATAGTGGCAAAGACACCATCTGAAGTTAGTGAAATAAAAAGTAGACAGGGAAATCAACTTGGGAATCTATGTTGA 1173 0.4638 MAISSSFRLFSAKIPQSLHLPYLSLSKTLISSTSILPRFSFFRPISISFQRVPTKPSSSSSSPSLTSASLQPIEDLPPKLQEIVKLFQAVEEPKAKYQQLLFYGKNLTPLDAQYKTTENKVQGCVSQVWVRAYLDSDKNVVFEADSDSVLTKGLAALLVQGLSGRPVEEVVRVSPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKALELYIEAKRSSELTGVEDPKVGVAGTGETGLNSNVEKPVRTSNLSSKIGGIEDSVVRLSSEVSGRDSNLGGGATSETALGSRGGRIKEILERALSPIELLVEDISYQHAGHAGVRGSDGETHFNLKVVSEEFEGKSLVKRHRVVYDLLQEELQNGLHALSIVAKTPSEVSEIKSRQGNQLGNLC* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0893 390 Gene3D - 286 375 IPR036065 -
Vvi19g0893 390 Pfam BolA-like protein 296 374 IPR002634 -
Vvi19g0893 390 PANTHER - 69 376 - -
Vvi19g0893 390 SUPERFAMILY BolA-like 288 379 IPR036065 -
Vvi19g0893 390 Gene3D - 76 217 - -
Vvi19g0893 390 SUPERFAMILY SufE/NifU 74 208 - -
Vvi19g0893 390 Pfam Fe-S metabolism associated domain 85 204 IPR003808 -
Vvi19g0893 390 FunFam SufE-like protein, chloroplastic 286 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0893 Vvi-Chr19 10332463 10337348 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0893 K22066 - vvi:100242888 695.656