Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0890 ATGGGTCAAATTCTCTCCATTATTATTCGCTGGTTGTGGGGTGAAAAAGATGATAAAAAGAAGCCAAGTGAAAAACTACCCCTGATTTCTCCACCGAGATTGGGCTCAGACACCAACTCTTCAAGCTCAAGGCCTGCGTTGCAACCAAATCCAATTACTTCTCCACCGAGTTTAGGATCATGTAGGGACTACACATTGCAGACAAATCTACGGACTCATCCTACGCCTCCACTGAGCTCTAGCTCTAACTCTAGCTCTAGCTCTAACCCATTCACCCACTCCAAAACAAGTGGTGCATCACGTCTTCAGCCAACACTGCAGACTCGTCATCAACTCAACTCGAGCTCAGGTGGCCTCTCTATCGCGACTGTATCATCCCCTGTCCAGCCAAAACTAGAGACTCACCAACAACTGAGTTCTAGCTCATGCAGCCAATCCAGCACAACCCATTTTTACCCAAAACCAGTGCAGACTCATCATCAACTCAACTTGAGCTCAGGTGGCCTCTCTATCGCGACTGTATCATCCCCTGTCCAGCCAAAACTAGAGACTCACCAACAGCTAAGTTCTAGCTCATGCAGCCAATCCAGCACAACCCATTTTTACCCAAAACCAGTGCAGACTCCTCAGCCACTCACCTCCAACTCGTGTGGCCTATCCAGGCCAAGTGGTACTTCTCATGCTCAGCCAAAGATACAGACTCATCCTTCACTACTCTCTAGCTCCTGCAGCCACTCTAGCGTGAGTGGTGCATCCCATTTCCAGTCAAATCCAGTGACTCTTCCACTGAGCTCTGTCCCAAGCAGCAACTCAGGCATCAATGGTGCATCGCAGCGAAACTCTCTGGGTTTTCCACTGAGCTTGGACCCACGCAGCAATTCCAGGTCTGATGATGCATTGGATCTGTTAATTCCTTCAAAATTTAAAATCCAAGTTGTAGGTGATGAGAAGCAAGTTTCTGCACGGCTCCACCATTACAACATAATTGAAGAAAACGAAGAACGAACCAGAGGAGTGGTAGGAAAAAATTGGTGGGACTGTAGCAGCTGTGAAGAAGACCTAGAGGAAGGAAAGCTTAGAGTAAGATGGATAAAGCACTACAGCAGTGAGTACAAAATATTGCTGGTGGGTGAAGGGGACTTCTCATTCTCTGCGTCTTTGGCCGTGGCTTTTGCTTCTGCTACAAACATAACCGCTACTTCTCTTGATTCTATAGAGTTTTTGAGCACAAACTATAGGCATGCCTTGTCCAACATCGATTCACTACGGAGCTTGGGAGCTAAGGTCATGCATGATGTTGATGCCACCAAAATGGCACACGTTTTCCCATTCAATTGCATGCGTTTTGATCGAGTTGTCTACAACTTCCCGCTGGCTGGATTTTTTCCCAATGCATCTAGGGAAGATAAGATCCGGCGAAATCAAATGCTGGTACAGCTGTTTTTAGAAAATGCTAAGAAGATGATTCACATAGATGGAGAAATCCACATTACTAACAAAAGCAATGGCTTCTTTTATGAGTGGAATTTGGAATTTCTAGCCTCAAGAGTTGGGCTTCGACTTATAGAAGAGGAGCCCTTTAATTTTATGGACTACCCAGGGTACCGCACCAAGTATGGCTTTGGGGGTGACAATAACTTCAACTGCAATCCCAGCAGAACATACAAATTTGGGCATAAAAAACTGAATTAG 1692 0.4586 MGQILSIIIRWLWGEKDDKKKPSEKLPLISPPRLGSDTNSSSSRPALQPNPITSPPSLGSCRDYTLQTNLRTHPTPPLSSSSNSSSSSNPFTHSKTSGASRLQPTLQTRHQLNSSSGGLSIATVSSPVQPKLETHQQLSSSSCSQSSTTHFYPKPVQTHHQLNLSSGGLSIATVSSPVQPKLETHQQLSSSSCSQSSTTHFYPKPVQTPQPLTSNSCGLSRPSGTSHAQPKIQTHPSLLSSSCSHSSVSGASHFQSNPVTLPLSSVPSSNSGINGASQRNSLGFPLSLDPRSNSRSDDALDLLIPSKFKIQVVGDEKQVSARLHHYNIIEENEERTRGVVGKNWWDCSSCEEDLEEGKLRVRWIKHYSSEYKILLVGEGDFSFSASLAVAFASATNITATSLDSIEFLSTNYRHALSNIDSLRSLGAKVMHDVDATKMAHVFPFNCMRFDRVVYNFPLAGFFPNASREDKIRRNQMLVQLFLENAKKMIHIDGEIHITNKSNGFFYEWNLEFLASRVGLRLIEEEPFNFMDYPGYRTKYGFGGDNNFNCNPSRTYKFGHKKLN* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0890 563 PANTHER PHENYLALANYL-TRNA SYNTHETASE 335 558 - -
Vvi19g0890 563 MobiDBLite consensus disorder prediction 180 244 - -
Vvi19g0890 563 MobiDBLite consensus disorder prediction 18 103 - -
Vvi19g0890 563 MobiDBLite consensus disorder prediction 33 103 - -
Vvi19g0890 563 MobiDBLite consensus disorder prediction 129 153 - -
Vvi19g0890 563 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 374 538 IPR019446 GO:0070042|GO:0070475
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0890 Vvi-Chr19 10302482 10304464 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0890 K19307 - vvi:100242885 1072.77