Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0888 ATGGCTGTCGGGGAGGAAATGGTGAAAGATGAAGTGGGTGTGGAAGAACAAGAGAAACGGTTGATGCATTATTCCTCGTTTCATCAAATTCTCTTGGTTGGTGAAGGGGACTTCTCTTTTTCTCTGTGTTTGGGTCACTCTTTTGCTTCTGCTTCCAATATCGTTGCTTCTTCTCTCGACCCATATGGTCTCTCTCTTTCCCTTTTCTTGTATTTTATATGTATTGGAATCAATTCGTTACTTGTGTACTATACTCTAATCTTGTAG 267 0.4045 MAVGEEMVKDEVGVEEQEKRLMHYSSFHQILLVGEGDFSFSLCLGHSFASASNIVASSLDPYGLSLSLFLYFICIGINSLLVYYTLIL* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0888 88 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 31 61 IPR019446 GO:0070042|GO:0070475
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0888 Vvi-Chr19 10282742 10283008 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0888 - K19307 vvi:104877637 173.326