Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0881 ATGTATTACAGTCCATACTCCATTGATAGGGACACTGAGCTCCAATCAATTACAAGAGTTTGTGATAATTCAAGACTACTTGGGAAGCCGCAACTGATAGAAGAACATGAGCTGGCATTTTTAAAGAGGGAGAAAGAAGAGATGGAAGCTCAAAAGAAACAGGCAGAGGCATTTCAGTTATCTCAACAGATGCAGTTTTTGTATAGTACAGAAATTGTTATGGGCCCTCAAGATGAGGAAAGTACTGCATATCATCACCAATATCCAACCGAGTCTTTCAGATGCCTATTGCGCAAAGAGATGATGAGTGATCCAATTGCAATCGTCTGTGGGCATAGCTGTGAGAGGAAGTTGATTCAGGAAATTTTCTGA 372 0.4059 MYYSPYSIDRDTELQSITRVCDNSRLLGKPQLIEEHELAFLKREKEEMEAQKKQAEAFQLSQQMQFLYSTEIVMGPQDEESTAYHHQYPTESFRCLLRKEMMSDPIAIVCGHSCERKLIQEIF* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0881 123 SUPERFAMILY RING/U-box 84 122 - -
Vvi19g0881 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 123 IPR013083 -
Vvi19g0881 123 Coils Coil 31 63 - -
Vvi19g0881 123 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 35 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0881 Vvi-Chr19 10123603 10123974 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0881 - - vri:117922991 137.887