Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0095 ATGGGGATTACGGGAAACATAGCACCCGAGTCTCTTAAAACAGGCAAGTTCACAGAGAAGAATGATGTCTTTAGCTTTGGCACACTTCTGTTGGAGCTTTTAACTGGACAGAGGGGTTATGATCTAAGCCAGGATGAGACAGCTCTTCTACTAAACTGTGGGGATGGAGGCGTGGATCCTACAATTCCAATAGAGGGAGAAGGGATCCTTGAGCAGCAAGTATATAAACTTTTTCTCAGATGCAGCAGCTTAACTGCAGAGGAGAGGCCAACCATGGTGGATGTTTCAAAAGAACTTCGACAAATTCTGAGGTTGGGTAGTGAGGATGACCTCCGTTCCAAGTCGGCTTCGGGAATGTCCTTACCTGCACACCTGCAACAACAACCATGGCAAAGAGCTAGGAGATTGCCACATTGGTATTTGCTTGCTGAGAAAATGAGAGAAAATAGGTTGTGA 456 0.4583 MGITGNIAPESLKTGKFTEKNDVFSFGTLLLELLTGQRGYDLSQDETALLLNCGDGGVDPTIPIEGEGILEQQVYKLFLRCSSLTAEERPTMVDVSKELRQILRLGSEDDLRSKSASGMSLPAHLQQQPWQRARRLPHWYLLAEKMRENRL* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0095 151 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 103 IPR045274 GO:0007166
Vvi12g0095 151 Pfam Protein tyrosine and serine/threonine kinase 7 99 IPR001245 GO:0004672|GO:0006468
Vvi12g0095 151 SUPERFAMILY Protein kinase-like (PK-like) 7 107 IPR011009 -
Vvi12g0095 151 Gene3D Transferase(Phosphotransferase) domain 1 1 135 - -
Vvi12g0095 151 ProSiteProfiles Protein kinase domain profile. 1 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0095 Vvi-Chr12 1519877 1520635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0095 2 99 Receptor kinase-like Gene Family AT1G71830 40.000 1.18e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vvi12g0095 PK_Tyr_Ser-Thr 5.6e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0095 - K13418 vri:117927318 203.756