Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0109 ATGTCTGCCTTTGTTGGAAAGTATGCAGATGAGCTTATAAAGAATGCCAAGTACATAGCTACACCTGGGAAGGGTATCTTGGCTGCAGATGAGAGCACCGGCACCATTGGAAAGCGTTTAGCCAGCATTAACGTTGAGAACATCGAAGCTAACCGCCAAGCCCTTCGAGAGCTTCTCTTCACCTCACCAAACGCCCTCCAATACCTCTCTGGTGTCATCCTCTTCGAGGAAACGCTTTACCAGAAAACCAGTGATGGGAAGCCTTTTGTCCAGGTTCTTGAAGAGAACAATGTCATCCCAGGCATAAAAGTGGACACGGGTGTTGTTGAGTTGGCTGGCACAAACGGTGAAACCACCACGCAGGGCTTTGACTCTCTCGGAGCTCGGTGCCAGAAGTACTACAAGGCCGGTGCACGCTTTGCAAAGTGGCGTGCAGTTCTCAAAATTGGCCCTACTGAGCCCTCTGAGCTTTCCATCCAGCAAAATGCACAGGGCTTGGCACGCTATGCCATCATCTGCCAGGAGAATGGCCTTGTGCCCATTGTTGAGCCTGAGATTCTCACTGATGGACCTCATGACATAGCCAAATGTGCTGCTGTCACTGAGACCGTGCTTGCATCTGTTTACAAGGCTCTCAATGATCACCATGTCCTTCTTGAAGGAACTCTTCTCAAACCCAACATGGTCACTCCAGGCTCTGATAGCCCAAAGGTAGCAGCTGAGGTGATTGCTGAGTACACAGTTCAAGCACTCCGCAGGACTGTCCCAGCTGCGGTGCCAGGGATTGTGTTCCTGTCTGGTGGACAAAGTGAAGAAGAAGCCACCCTCAACCTCAATGCAATGAACAAGTTGGAGGTGTTGAAGCCATGGACTCTCTCATTCTCATTTGGGAGGGCACTGCAGCAAAGCACACTCAAGACATGGGGTGGAAAGGAAGAGAATGTTGCCAAAGCTCAAGGAGCATTCCTTGCAAGATGCAAGGCCAATTCTGAGGCAACTCTGGGGAAGTTTGTTGGTGGAAGCCAAGCTGGGTTGGCTTCTGAGAGTTTGTATGAGAAGAACTACAAGTATTAG 1074 0.5019 MSAFVGKYADELIKNAKYIATPGKGILAADESTGTIGKRLASINVENIEANRQALRELLFTSPNALQYLSGVILFEETLYQKTSDGKPFVQVLEENNVIPGIKVDTGVVELAGTNGETTTQGFDSLGARCQKYYKAGARFAKWRAVLKIGPTEPSELSIQQNAQGLARYAIICQENGLVPIVEPEILTDGPHDIAKCAAVTETVLASVYKALNDHHVLLEGTLLKPNMVTPGSDSPKVAAEVIAEYTVQALRRTVPAAVPGIVFLSGGQSEEEATLNLNAMNKLEVLKPWTLSFSFGRALQQSTLKTWGGKEENVAKAQGAFLARCKANSEATLGKFVGGSQAGLASESLYEKNYKY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0109 357 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 217 227 IPR029768 -
Vra6g0109 357 Pfam Fructose-bisphosphate aldolase class-I 11 357 IPR000741 GO:0004332|GO:0006096
Vra6g0109 357 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 1 357 IPR000741 GO:0004332|GO:0006096
Vra6g0109 357 Gene3D Aldolase class I 1 357 IPR013785 -
Vra6g0109 357 Coils Coil 38 58 - -
Vra6g0109 357 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 5, CYTOSOLIC-RELATED 1 357 - -
Vra6g0109 357 SUPERFAMILY Aldolase 3 357 - -
Vra6g0109 357 CDD FBP_aldolase_I_a 9 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0109 Vra-Chr6 767794 770002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0109 1 357 Miscellaneous Gene Families AT3G52930 78.771 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0109 K01623 - gmx:100792394 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0109 6 767794 770002 Vra6g0109 6 767794 770002 ECH