Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2695 ATGTCACATCACCACGAGGGTGATGCTGAATACATGGCGGATGAATGTGAAATGGAGGATGTGGAAGATGATGTGGACGATGAATTTATTGACAATGGAGAGAGGGATGGTGTAGAGTCTGATGCAGATGAATTTGATTACTCGAGTGACAAGGTAGTAGACACTACAGCTGCTCAGGTTAGAAGAGGACAAGACATCCAGGGAATCCCTTGGGATAACCTTAGCATCACCAGAGAAAGATATCGGCGAACTAGGCTTGAGCAATACAAGAATTATGAAAATATCCCTGGTTCAGGAGACAAGTCAGGGAAGTATTGTAAGAATACAAAAAAAGGATACTCATTTTATGACTTTAAAAAGAATACAAGATCAGTAAAGTCAACTATTCTTCATTTTCAGTTAAGGAATTTAGTATGGGCTACATCAAAGCATGATGTATACCTTATGTCTCAGTTTTCGATAATGCACTGGTCCTCTATGACTTGCAAAAGTTCAGAAGTTCTTGATGTTTCAGGGCACGTTGCACCATCAGAGAAACATCCTGAAAGTCTGTTAGAAGGATTTACTCACACACAAGTCAGTACTCTTGCAGTGAGAGAGAAGCTTCTAGTTGCCGGTGGATTTCAGGGTGAACTTATTTGTAAGCGCCTAAATCGACCTGGTGTTAGCTTTTGCACGAGAACAACTTTTGATGATAATGCTATCACCAATGCCATTGAAATTTATACTTCTCCTAGTGGTGCAGTTCATTTCACAGCAGCAAATAACGATTCTGGAGTCAGAGACTTTGATATGGAGAAATTTCAGCTTTCTAACCATTTTCGTTTTCCCTGGCCTGTGAATCACACTTCTCTCAGTCCAAATGGTAAACTACTACTAATTGTTGGAGACAATCCTGAAGGTATGTTGGTGGACTCCCAAAACGGAAAGACAGTGGTTACCTTGTCTGGGCACTTTGATTACTCATTTGCGTCATCATGGCATCCTGATGGCATGACCTTTGCCACTGGAAACCAGGATAAAACATGCCGAATTTGGGACATGCGGAATTTATCCAAGTCAGTGGGTGTACTAAAGAGCAACCTTGGAGCCATTCGTTCAATCAGGTATTCCTCAGATGGCAAGTATATGGCTGTGGCAGAGCCTGCAGATTTTGTACATGTCTATGATGTAAAAGGTGGGTATGAGAAGGAACAGGAAATTGATTTCTTTGGTGAGATATCGGGAATATCTTTCAGTCCGGACACCGAATCCTTGTTTATTGGGGTCTGGGATCGCACTTATGGTAGCCTTCTTGAGTATATCCGGCGTCGGAATTATACATACCTTGATGCACTAATTTAA 1344 0.4152 MSHHHEGDAEYMADECEMEDVEDDVDDEFIDNGERDGVESDADEFDYSSDKVVDTTAAQVRRGQDIQGIPWDNLSITRERYRRTRLEQYKNYENIPGSGDKSGKYCKNTKKGYSFYDFKKNTRSVKSTILHFQLRNLVWATSKHDVYLMSQFSIMHWSSMTCKSSEVLDVSGHVAPSEKHPESLLEGFTHTQVSTLAVREKLLVAGGFQGELICKRLNRPGVSFCTRTTFDDNAITNAIEIYTSPSGAVHFTAANNDSGVRDFDMEKFQLSNHFRFPWPVNHTSLSPNGKLLLIVGDNPEGMLVDSQNGKTVVTLSGHFDYSFASSWHPDGMTFATGNQDKTCRIWDMRNLSKSVGVLKSNLGAIRSIRYSSDGKYMAVAEPADFVHVYDVKGGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYIRRRNYTYLDALI* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2695 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 350 - -
Vra5g2695 447 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 447 - -
Vra5g2695 447 SUPERFAMILY WD40 repeat-like 119 427 IPR036322 GO:0005515
Vra5g2695 447 Gene3D - 231 442 IPR015943 GO:0005515
Vra5g2695 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 350 IPR001680 GO:0005515
Vra5g2695 447 Pfam WD domain, G-beta repeat 310 347 IPR001680 GO:0005515
Vra5g2695 447 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 1 447 - -
Vra5g2695 447 SMART WD40_4 308 347 IPR001680 GO:0005515
Vra5g2695 447 SMART WD40_4 351 390 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2695 Vra-Chr5 33618010 33622410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2695 303 427 Miscellaneous Gene Families AT5G08390 28.000 2.00e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2695 - - gmx:100792497 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2695 5 33618010 33622410 Vra5g2695 5 33618010 33622410 ECH