Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01279 ATGTCTCAATACCATGGTGATGAAATGGACTATGCGGCAGATGATAATGAAATGGCAGAGGTAGAAGATGACATGTATTTTCGCGGCAGAGCATTTGGTGAATCAGATTCAGATGACGATGACGACTACGAATATGACCCTTTGGAGGACCGAATAACAGATACCACTGCTGCAGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGACCATTAGTCGCGAGAAATATAGGCAAACCAGACTAGAGCAATACAAGAATTATGAAAATATACCGCAATCTGGGGAAATGTCAGAGAAGGAATGCAAAGCAACAGATAAAGGGGGAAATTATTATGATTTCTGGCAAAACACTAGATCGGTGAAGTCAACAATACTTCATTTCCAATTGAGGAATTTGGTTTGGTCAACCTCAAAACATGACGTATATCTTGTTTCAAATTACTCAATTGTTCACTGGTCTTCATTAAGTTCTAAGAGTTCTGAAGTCTTGAATGTAGCAGGGCATGTAGCTCCGTGTGAGAAACATCCTGGAAGCCTCTTGGAAGGTTTTACTCAGACACAAATTAGTACGCTGGCAGTACGTAATAACTTGTTGATTGCTGGAGGGTTTCAAGGAGAACTTATTTGCAAGTACTTAGACCGGCCTGGAGTTAGTTTTTGTACTCGAACTACATATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGATCATCCGAGCGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTTTGATATGGAGAGGTTTCAGCTTTCAAAGCATTTTTCCTTTCCTTGGCCAGTAAATGGAGAGAGAATTGAGAGTAATTGTGTCTGTGGGCCTTCTGCACATGTATCTAAGAAAGAAGAAAAAAGGAAATGGACCACTGAAGGTGGAGTGAAGGAGACATATATGTGGATGAGAAGAGAGGAAATGATGCTTGGTGGAAGGAAAGTAAGAAATGTGAATGTGGCAGCAAGTGACTGGAGAGGAAGATTACGCAATGATGAGATAAGTAGGGGTGCAATTGCAAGACATACTTCATTAAGCCCTGATGGGAAACTACTTGTGATTGTTGGAGACAACCCAGAAGCACTACTGGTGGATTCTCAAACAGGAAAGACTATCACACCTTTGCATGGACACTTGGATTTCTCGTTTGCATCTGCATGGCATCCTAATGGGCAAATATTTGCTACCGGGAACCAAGACAAAACATGTCGTGTTTGGGATGTTCGGAACTTGTCAAAATCTGTTGCTGTTCTTAAAGGCAACCTTGGAGCTATTCGTTCAATACGTTTCACATCTGATGGGCAGTTCATGGCGATGGCAGAGCCAGCTGACTTCGTGCATGTTTACGATGCAAAGCATGGGTTTGAAAAGGAGCAGGAGATTGATTTTTTTGGGGAGATCTCTGGTGTAATCACTTTTCATTGGTGTTTGGGACCGCACCTATGGAAGCCTTCTACAGCTGAATCGACGCAGAAATTACATGTATCTGGACTGCTTGAATTTGAGTTTGGTGGTACCATCTTAGCCAAAGAAGAAAAACTGATGGATTGCCTCATCATACATTGTAGAAGAGCATGCGTTGAGGATGTTACAGTTGTTTGA 1650 0.4206 MSQYHGDEMDYAADDNEMAEVEDDMYFRGRAFGESDSDDDDDYEYDPLEDRITDTTAAEARRGKDIQGIPWDRLTISREKYRQTRLEQYKNYENIPQSGEMSEKECKATDKGGNYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVSNYSIVHWSSLSSKSSEVLNVAGHVAPCEKHPGSLLEGFTQTQISTLAVRNNLLIAGGFQGELICKYLDRPGVSFCTRTTYEDNAITNAVEIYDHPSGAVHFMASNNDSGVRDFDMERFQLSKHFSFPWPVNGERIESNCVCGPSAHVSKKEEKRKWTTEGGVKETYMWMRREEMMLGGRKVRNVNVAASDWRGRLRNDEISRGAIARHTSLSPDGKLLVIVGDNPEALLVDSQTGKTITPLHGHLDFSFASAWHPNGQIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGQFMAMAEPADFVHVYDAKHGFEKEQEIDFFGEISGVITFHWCLGPHLWKPSTAESTQKLHVSGLLEFEFGGTILAKEEKLMDCLIIHCRRACVEDVTVV 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01279 549 SMART WD40_4 384 423 IPR001680 GO:0005515
Vimu2g01279 549 SMART WD40_4 427 466 IPR001680 GO:0005515
Vimu2g01279 549 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 432 IPR001680 GO:0005515
Vimu2g01279 549 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 426 - -
Vimu2g01279 549 MobiDBLite consensus disorder prediction 1 45 - -
Vimu2g01279 549 Gene3D - 327 507 IPR015943 GO:0005515
Vimu2g01279 549 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 7 486 - -
Vimu2g01279 549 Pfam WD domain, G-beta repeat 386 423 IPR001680 GO:0005515
Vimu2g01279 549 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 189 478 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01279 Vimu-Chr2 8547982 8552171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01279 379 522 Miscellaneous Gene Families AT5G08390 26.389 5.12e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01279 - - gmx:100788712 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01279 2 8547982 8552171 Vimu2g01279 2 8547982 8552171 ECH