Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00266 ATGCTACCGTCTGTTGATGAACTTGGCACACCAAAACAACCAAGGAATCAACAATCTCTGCGATCAGAATCATCAAATTCCCTTGCCAGCACAAGAGCAATTCTTGGCCAACCTCGACTTCAAAGGACTAAACCTATCATATGGTGTGCTGCAATACTTTGCTTGATATTCAGCCTCGTACTCATCTTCTTTGGAATTGCAATACTGATCCTCTACCTAGCCATGAAGCCAAGAAATCCCACTTTTGACATTCCCAATGCGAGCCTCAATGTAGTGTACTTTGACTCACCACAGTACCTCAACGGTGAGTTCACTCTCCTTGCAAATTTCTCCAATCCTAACAGAAGAATCGGGGTGAGGTTTGAGTCCTTGAACATTGAGCTTTTCTACTCGGACAGACTGGTATCATCACAGAGAGTAAAGCCTTTCACTCAGAGGCCAAGGGAAAACAGTTTGCAGTCAGTGAACTTGATATCCAGCTTAGTGTTTTTGCCTCAAGATGTTGGTGTAAAGCTTCAAAGGCAAGTGGAAAATAACAGGATCAATTACAATGCAAGAGGAACTTTTAAAGTGAGGTTCAATATTGGCCTTATCCATTTATCTTACTGGCTGCATACCATATGCCAGATAGAGATGACCAGTCCTCCAACTGGTATTCTGCTGGCCAGACAATGCATAACAAGCAGATCAAGTTGA 696 0.4282 MLPSVDELGTPKQPRNQQSLRSESSNSLASTRAILGQPRLQRTKPIIWCAAILCLIFSLVLIFFGIAILILYLAMKPRNPTFDIPNASLNVVYFDSPQYLNGEFTLLANFSNPNRRIGVRFESLNIELFYSDRLVSSQRVKPFTQRPRENSLQSVNLISSLVFLPQDVGVKLQRQVENNRINYNARGTFKVRFNIGLIHLSYWLHTICQIEMTSPPTGILLARQCITSRSS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00266 231 Pfam Late embryogenesis abundant protein 111 201 IPR004864 -
Vimu1g00266 231 MobiDBLite consensus disorder prediction 1 25 - -
Vimu1g00266 231 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 18 220 - -
Vimu1g00266 231 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00266 Vimu-Chr1 1550784 1551479 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00266 - - pvu:PHAVU_008G282100g 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00266 1 1550784 1551479 Vimu1g00266 1 1550784 1551479 ECH
Vimu2g02330 2 18699984 18701288 Vimu1g00266 1 1550784 1551479 PCT