Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01621 atgacaCAACCACCGGTACCGTCACCTCCTCCGCCTCTACAACCACCACCTCCTCCACCAACCGCACCACCGTCACAACCTACCGACGGCGTTCGCGTCCGTTGTGCTGGTTGTCGCATGATCTTAACCGTAGCGCCTGGACTGACTGAATTCGCTTGCCCGACCTGTCGAATGCCGCAGATGCTTCCACCAGAACTCATGGCTAGGGTCCACCAAACGGCACCGTCAACGTCGCCGTTAACTCCGCCTTCACAGAATTTGCCGGCACATGGCATTGATCCAACTAAGATTCAACTTCCTTGCGCTTCCTGTAAGGCGATTCTCAATGTTCCTCATGGTCTCTCGCGATTCTCTTGTCCTCAATGTAAAGTTGACCTCGCCGTTGATCTCTCTAAGGTTAAACAGTTCTTTGCTCCGCCTCCACCTGAAGAAGTTAACGAGGTTGCTGTTGAAGTCGAGCGGGATGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGACCACCAAAAGTATCTATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGATCCTACCTATGATCCAAAAACTAAAGATAATTTGGAAAGTTCAAAGGCTTTGTCATGCTTGCAAATTGAGACCTTGGTCTATGCTTGTCAGagaCACCTTCAGCACCTCCCCAATGGAGCTAGGGCAGGATTCTTTATTGGAGACGGAGCTGGTGTAGGTAAAGGTCGGACAATTGCAGGTCTAATTTGGGAGAACTGGCACCATGGAAGGAGAAAGGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGCCGGTGCAACATGTATTGAAGTGCATGCTTTGAACAAACTGCCGTATTCTAAGCTTGATTCAAAGTCTGTTGGGATCAAGGAGGGAGTTGTTTTCTTGACATACAATAGCCTTATAGCATCTTCAGAAAAAGGTAGGTCTCGTCTCCAGCAGCTTGTGCAGTGGTGTGGGCCAGGGTTTGATGGCTTAGTAATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAAGCTGGTAGTCAGCCAACACGCACTGGAGAAGCAGTGCTTGAAATTCAGGATAAATTACCTGAAGCCCGCGTTGTTTATTGCTCAGCAACTGGTGCATCTGAACCCCGCAATATGGGTTATATGGTTAGACTTGGTCTTTGGGGAGATGGAACTTCTTTCTCTGATTTCCGTGAATTTCTTGGTGCTCTTGATAGAGGGGGTGTTGGAGCTCTAGAATTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTGTGTCGGACACTTAGCTACGAGGGTGCTGAGTTTGAAGTTATTGAAGCGCCATTAGAAGATAAAATGATGGACATGTACAAAAAAGCAGCAGAATTTTGGGCAGAATTACGAGTAGAATTGCTGTCAGCTAGTGCCTTTCTAAATGATAAACCTAACACTAGTCAGCTATGGCGATTATACTGGGCAAGCCACCAGCGTTTCTTCAGACACATGTGTATGTCTGCTAAAGTCCCTGCTACTGTAAGACTAGCAAAGCAAGCGTTAGTTGATGAAAAATCTGTAGTCATTGGTCTCCAGAGTACTGGTGAAGCAAGGACAGAAGAAGCTGTGACAAAATATggTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTATCCGTTACCAGAAAAACCTGAACTCCTTCCAGGTGAGGATGGTGTTAAAGAGCTCCAAAGGAAGAGGCACTCTGCAACTCCTGGTGTTTCATTAAAAGGAAGGGTCAGAAAAGCAGCCAAGTGGCAACCTCCTAGTGATGCAGAAAGTGATGACGAATCAGAAACTGATTCTGGCATTGAATCTAATGACTCGGATGAGGAGTTTCAGATATGTGAAATTTGCACCACTGAGGAGGAAAGGAAAAAATTGCTACAGTGTTCGTGCTGTGGTAAATTAGTCCATTCTGCATGCTTGATGCCACCAATTGGTGATGTAGTTCCTGAAGAGTGGTCGTGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTCTAGCAAGGCAGGCCTACATAGCTGAACTCCAGAAGAGGTATGATGCAGCCTTGGAACGTAAGACAAAAATATTAGAGATTATTCGTTCTTTGGATCTTCCAAACAATCCTTTGGATGATATTACTGACCAGCTGGGGGGGCCCGACAAAGTTGCAGAAATTACAGGAAGGAGAGGAATGCTAGTGAGGGGCCCTACTGGAAAGGGTGTAACTTATCAGGCTCGTAATACAAAGGATGTCACTATGGAAATGGTTAACATGCATGAAAAGCAGCTTTTTATGGACGGTAAAAAGTTTGTTGCTATTATCTCTGAAGCTGGATCGGCTGGTGTTTCTTTGCAGGCGGATAGGAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTAACGCTAGAGCTTCCTTGGAGTGCTGACCGTGCAATTCAGCAGTTCGGAAGAACTCATAGATCAAATCAAGCTTCAGCACCAGAATACAGGATACTCTTTACTAATCTTGGTGGAGAACGACGATTTGCATCGATTGTTGCGAAGAGATTAGAATCACTTGGTGCTTTGACTCAGGGGGACCGCAGGGCTGGGCCTTCGTTAAGTGCTTATAATTATGATAGCGCTTATGGAAAGAGGGCTCTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTACCTGTTGTACCTCCGGGATGTTCATCTGACAGACCAGATACTATTCAAGATTTCATTATTCAGGCAAAAGCTGCTCTTGTATCTGTTGGGATAGTTAGGGATTCAACTCTTGGAAATGGTAAAGATCCTGGAAGGTTATCTGGGCGTATTATTGATTCAGATATGCACGAAGTTGGACGATTCCTCAATCGGCTTTTGGGACTACCTCCTGATATTCAGAATGGACTATTTGAATTATTTGTGAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTCGACACGGGCATTGTTGACATGAAAGCTAATGTCATTGAACTACAGGGTACTCCAAAGACAGTTCATGTTGATCAATTGACTGCAGCTTCAACCGTTCTGTTTACGTTTATCTTGGATCGCGGGATCACATGGGAGTCAGCAAGTAGCATGCTGAATGAAAAGCAGAAGGATGGGCTTGGCTCAGCCAATGATGGTTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATTTCATTTTAGCATTTGAAAGTTCTACTTCGGGCATGTATAAGATAGTTCGTCCTCCCGTTGGGGAATCAAACCGGGAGATGCCTCTATCtgaattaaaaagtaaatacaGAAAAGTTTCATCCTTAGAAAAAGCTCAAACTGGCTGGGAAGAAGAATACGAAGTCTCATCTAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGCAACTTCTGTACAGTGGGCAGAAGACTACAGGAAGTAAATGTCTTGGGTGGCCTCATTCTTCCTGTTTGGGGAACCATAGAAAAAGCCCTTTCTAAGCAGGCCCGCCTAAGCCATAGGAGGCTACGTGTTGTACGCATAGAAACTACTGTGGATAGCAAACGAATTGTTGGGCTTCTTGTTCCTAATGCAGCTGTTGAAACTGTGCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA 3774 0.4449 MTQPPVPSPPPPLQPPPPPPTAPPSQPTDGVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMARVHQTAPSTSPLTPPSQNLPAHGIDPTKIQLPCASCKAILNVPHGLSRFSCPQCKVDLAVDLSKVKQFFAPPPPEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPDPTYDPKTKDNLESSKALSCLQIETLVYACQRHLQHLPNGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDAGATCIEVHALNKLPYSKLDSKSVGIKEGVVFLTYNSLIASSEKGRSRLQQLVQWCGPGFDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLEIQDKLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMDMYKKAAEFWAELRVELLSASAFLNDKPNTSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALVDEKSVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSLKGRVRKAAKWQPPSDAESDDESETDSGIESNDSDEEFQICEICTTEEERKKLLQCSCCGKLVHSACLMPPIGDVVPEEWSCHLCKEKTDEYLLARQAYIAELQKRYDAALERKTKILEIIRSLDLPNNPLDDITDQLGGPDKVAEITGRRGMLVRGPTGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCSSDRPDTIQDFIIQAKAALVSVGIVRDSTLGNGKDPGRLSGRIIDSDMHEVGRFLNRLLGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDMKANVIELQGTPKTVHVDQLTAASTVLFTFILDRGITWESASSMLNEKQKDGLGSANDGFYESKREWLGKRHFILAFESSTSGMYKIVRPPVGESNREMPLSELKSKYRKVSSLEKAQTGWEEEYEVSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGTIEKALSKQARLSHRRLRVVRIETTVDSKRIVGLLVPNAAVETVLQGLAWVQEIDD 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01621 1257 Gene3D - 205 409 IPR027417 -
Tsu08g01621 1257 MobiDBLite consensus disorder prediction 1 30 - -
Tsu08g01621 1257 Pfam C-terminal domain on Strawberry notch homologue 747 1036 IPR026937 -
Tsu08g01621 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 422 IPR027417 -
Tsu08g01621 1257 PANTHER STRAWBERRY NOTCH-RELATED 30 1257 IPR026741 GO:0006355
Tsu08g01621 1257 ProSitePatterns Zinc finger PHD-type signature. 659 703 IPR019786 -
Tsu08g01621 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 726 IPR013083 -
Tsu08g01621 1257 SMART PHD_3 658 704 IPR001965 -
Tsu08g01621 1257 MobiDBLite consensus disorder prediction 161 206 - -
Tsu08g01621 1257 ProSiteProfiles Zinc finger PHD-type profile. 656 706 IPR019787 -
Tsu08g01621 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 802 907 IPR027417 -
Tsu08g01621 1257 MobiDBLite consensus disorder prediction 1 26 - -
Tsu08g01621 1257 SUPERFAMILY FYVE/PHD zinc finger 649 708 IPR011011 -
Tsu08g01621 1257 MobiDBLite consensus disorder prediction 604 651 - -
Tsu08g01621 1257 MobiDBLite consensus disorder prediction 636 651 - -
Tsu08g01621 1257 PANTHER OS08G0223700 PROTEIN 30 1257 - -
Tsu08g01621 1257 Pfam P-loop containing NTP hydrolase pore-1 179 479 IPR039187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01621 Tsu-Chr8 19225568 19244496 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01621 - - gmx:100808670 2236.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01621 08 19225568 19244496 Tsu08g01621 08 19225568 19244496 ECH