Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01285 ATGAACTATTTTTTTCTTGATATTTCTGGCCAAAAGAGCAACAAGAAATGGATCATCACAGCTGCAGACGCCAAATCACTTGGTGATATTCAAGGTATAGATTGGGTTGACATTGATATTATGTGGGATGTTAACCATACCAAATTTAGGAACCGTAGACTTAGGAAGTATGAAAATGTTGAAGATGTAAATGGGTCTGGAAAAGAGGCTAAGAAAATACAACCATCCATAACACCTCGACCTGATGGAACTTACTATAACTTTTGGCAATACACAAAATTGCGGGACCACTATATGAGTTTGGAATTGCAAAACAGTCGTCTCAATCATCTCATTTGGTCAACATCCAAACATGATGTGTATCTCCCCTCCGAATGTAGTGTCCACCATTGGTCTGGAATAACTTCCTCTAAATCCGATGTTGTGGATTTAAAGAAACTTGTAAAACCTACTGAGAACCATCCGGGAAGTCTTGCTGACATGGAAGGTTTTAATCAAACAAAAGTTAGAGCAATGTCAGTAGGGTTTAACCTATTGACGGTTGTAGGTTCCCATGGACGACTTTTTTGCAAGCGCTTAGATAGAAATGGAGTTAGTTTTTGTCACAATTTGCCTATTGAAGGACAAATACAAGGGAGACAATCAACTACTGAGATTTGCAAGAATGAAAGTGGCAATATTTGCTTCACGGCTTCTTTTAAAAGCAACATGTTGAAACTTTTTGAAGCACAAACATTTCAGCTTTTAAACACTTTTCAATTGGGTTGGCCCATACAGCACACTTCAATGAGTCCTGAAGGAGGGTCCATTCTAGTTGTTGGAGCACATAGAGATGGAGCACTATTGGATACTCTGACTGGACAGCATATTGCATCTCTACCTGGACATCTGGATAGTTCACTTTCATGTGCTTGGCATCCCAATGGAATTTATTTTGCAACCGGTAACCAAGATAGAACATGTCGCATCTGGGACATACGCAACATGGGAAACAGTCTTTACCTTCTTAAGGGAAACATGGGAGGCATATCTTCAATAAATTTCACATCTGATGGAGAGCTTATGGCAATGGCTGAAAGTGCGGATTTTGTCCATATCTTTGATACCAAACAACATTATGAAAATGCACAAGTCATTGATTTTTTTGGAGAGGTATCTGGTTTATCTTTTAGCCCGGACACGCAGTCCCTTTTTATTGGTGTTGAACCGGAGCAAGAAATGATTTGCTCAACCTTGCTTTGGTATGACAAGTGCAGAAATCTTGAGGGATATGATTATGTTTAG 1284 0.3925 MNYFFLDISGQKSNKKWIITAADAKSLGDIQGIDWVDIDIMWDVNHTKFRNRRLRKYENVEDVNGSGKEAKKIQPSITPRPDGTYYNFWQYTKLRDHYMSLELQNSRLNHLIWSTSKHDVYLPSECSVHHWSGITSSKSDVVDLKKLVKPTENHPGSLADMEGFNQTKVRAMSVGFNLLTVVGSHGRLFCKRLDRNGVSFCHNLPIEGQIQGRQSTTEICKNESGNICFTASFKSNMLKLFEAQTFQLLNTFQLGWPIQHTSMSPEGGSILVVGAHRDGALLDTLTGQHIASLPGHLDSSLSCAWHPNGIYFATGNQDRTCRIWDIRNMGNSLYLLKGNMGGISSINFTSDGELMAMAESADFVHIFDTKQHYENAQVIDFFGEVSGLSFSPDTQSLFIGVEPEQEMICSTLLWYDKCRNLEGYDYV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01285 427 SUPERFAMILY WD40 repeat-like 100 400 IPR036322 GO:0005515
Trre3g01285 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 328 - -
Trre3g01285 427 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 20 421 - -
Trre3g01285 427 SMART WD40_4 286 325 IPR001680 GO:0005515
Trre3g01285 427 SMART WD40_4 329 368 IPR001680 GO:0005515
Trre3g01285 427 Pfam WD domain, G-beta repeat 287 325 IPR001680 GO:0005515
Trre3g01285 427 Gene3D - 196 416 IPR015943 GO:0005515
Trre3g01285 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 328 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01285 Trre-Chr3 9759045 9761670 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01285 281 381 Miscellaneous Gene Families AT5G08390 30.000 6.96e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01285 - - apan:127254757 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01285 3 9759045 9761670 Trre3g01285 3 9759045 9761670 ECH