Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01677 ATGACACAACCACCGGTACCGTCTCCTCCTCCGCCTCTACAACCACCACCTCCACCACCAACCGCACCACCGTCACAACCTTCCGATGGCGTTCGCGTTCGCTGTGCTGGTTGTCGTATGATCTTAACCGTAGCACCTGGACTGACTGAATTCGCTTGTCCGACCTGTCGAATGCCGCAGATGCTTCCGCCAGAACTCATGGCTAGGGTCCAACAAACGGCACCGTCAACGTCGCCGTTAACTCCGCCTTCACAGAATTTGCCGGCGCACGGCATTGATCCAACTAAGATTCAACTTCCTTGCGCTTCCTGTAAGGCGATTCTCAATGTTCCTCATGGTCTATCGCGATTCTCTTGTCCTCAATGTAAAGTTGACCTCGCCGTCGATCTCTCTAAGGTTAAACAGTTTTTTGCTCCGCCTCCGCTTGAAGAAGTTAACGAGGTTGCTGTTGAAGTCGAGCGGGATGAAGATGAAGGCGGCATGGTTGGAGAAACATTTACAGATTATCGACCACCAAAAGTATCTATTGGACCTCCACATCCAGATCCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGATCCTACATATGATCCAAAAACTAAAGATAATTTGGAAAGTTCAAAAGCTTTGTCATGCTTGCAAATTGAGACCGTGGTCTATGCTTGTCAGAGACACCTTCATCACCTCCCCAATGGAGCTAGGGCAGGATTTTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGGACAATTGCAGGTCTAATTTGGGAGAACTGGCACCATGGAAGGAGAAAGGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGCCGGTGCAACATGTATTGAAGTGCATGCTTTGAACAAACTGCCGTATTCTAAGCTTGATTCAAAGTCTGTTGGAATCAAGGAGGGAGTTGTTTTCTTGACATACAATAGCCTTATAGCATCTTCAGAAAAAGGTAGGTCTCGTCTCCAGCAGCTTGTGCAGTGGTGTGGACCAGGGTTTGATGGCTTAGTAATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAAGCTGGTAGTCAGCCAACACGCACTGGAGAAGCAGTGCTCGAAATTCAGGATAAACTACCTGAAGCCCGCGTTGTTTATTGCTCGGCAACTGGTGCATCTGAACCCCGCAATATGGGTTATATGGTTAGACTTGGTCTTTGGGGAGATGGAACTTCTTTCTCAGATTTCCGTGAATTTCTTGGTGCTCTTGATAGAGGGGGTGTTGGAGCTCTAGAATTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGTCGGACACTTAGCTACGAGGGTGCTGAGTTTGAAGTTATTGAAGCGCCGCTAGAAGATAAAATGATGGAAATGTACAAAAAAGCAGCAGAATTTTGGGCAGAATTACGAGTAGAATTGCTGTCAGCTAGTGCCTTTCTAAATGATAAACCTAACACTAGTCAGCTATGGCGATTATACTGGGCAAGCCACCAGCGTTTCTTCAGACACATGTGTATGTCTGCTAAAGTCCCTGCTACTGTAAGACTAGCAAAGCAAGCACTAGTTGATGAAAAATGTGTAGTCATTGGTCTCCAGAGTACTGGTGAAGCAAGGACAGAAGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGGGAATTGCTGCTTAAATTTGTGGAAGAAAATTATCCGTTACCAGAAAAACCTGAACTCCTTCCAGGGGAGGATGGTGTTAAGGAGCTCCAAAGGAAGCGGCACTCTGCAACTCCTGGTGTTTCATTAAAAGGAAGGGTCAGAAAAGCAGCCAAGTGGCAACCTCCCAGTGATGAAGAAAGTGATGAAGAATCTGAAACTGATTCTGGCATTGAATCTAATGACTCAGATGAGGAGTTTCAGATATGTGAAATTTGCACCACTGAGGAGGAAAGGAAAAAATTGCTACAGTGTTCGTGCTGTGGTAAATTAGTCCATTCTGCATGCTTGATGCCACCAATTGGTGATGTAGTTCCTGAAGAGTGGTCGTGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTATAGCAAGGCAGGCCTACATAGCTGAACTCCAGAAGAGGTATGATGCAGCCTTGGAGCGTAAGACAAAAATATTAGAGATTATTCGTTCTTTGGATCTTCCAAACAACCCTCTGGATGATATTACTGACCAGCTAGGGGGCCCCGACAAAGTTGCAGAAATTACAGGAAGGAGAGGAATGCTTGTGAGGGGCCCTACTGGAAAGGGTGTAACTTATCAGGCTCGTAATACGAAGGATATCACTATGGAAATGGTTAACATGCACGAAAAGCAGCTTTTTATGGACGGTAAAAAGTTTGTTGCTATTATCTCTGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCGGATAGGAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTAACGCTAGAGCTTCCTTGGAGTGCTGACCGTGCAATTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGCTTCAGCACCAGAATACAGGATACTCTTTACTAATCTTGGTGGAGAACGACGATTTGCATCAATTGTTGCGAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGACCGCAGGGCTGGGCCTTCATTAAGTGCTTATAATTACGATAGCGCTTATGGAAAGAGAGCTCTAATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTACCTGTTGTACCTCCGGGATGTTCATCTGACAGACCAGATACTATTCAAGATTTCATTATTCAGGCAAAAGCTGCTCTTGTATCTGTTGGGATAGTTAGGGATTCAACTCTTGGAAATGGTAAAGATCCGGGAAAGTTATCTGGGCGAATTATTGATTCAGATATGCACGAAGTTGGACGATTCCTCAATCGGCTTTTGGGACTACCTCCTGATATTCAGAATGGGCTATTTGAATTATTTGTGAGTATATTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTCGACACGGGCATTGTTGACTTGAAAGCTAATGTCATTGAACTACAGGGTACTCCAAAGACGGTTCATGTTGATCAATTGACTGCAGCTTCAACCGTTCTGTTTACGTTCATCTTGGATCGTGGGATCACATGGGAGTCAGCAAGTAGCATGCTGAATGAAAAGCAGAAGGATGGGCTTGGCTCAGCCAATGATGGCTTCTATGAATCGAAGAGGGAGTGGTTGGGAAAACGTCATTTCATTTTAGCATTTGAAAGTTCTGCTTCGGGTATGTATAAGATAGTTCGTCCTCCCGTTGGGGAATCAAACCGGGAGATGCCTCTATCTGAATTAAAAAGTAAATACAGAAAAGTTTCATCCTTAGAAAAGGCTCAAACTGGTTGGGAAGAGGAATATGAAGTCTCATCTAAACAGTGCATGCATGGTCCCAAATGTAAGATTGGCAACTTCTGTACAGTGGGCAGAAGACTACAGGAAGTAAATGTCTTGGGTGGCCTCATTCTTCCTGTTTGGGGAACCATAGAAAAAGCCCTTTCTAAGCAGGCCCGCCTAAGCCATAGGAGGCTACGTGTTGTACGCATAGAAACTACTGTGGATAGCAAACGAATTGTTGGGCTTCTTGTTCCAAATGCAGCTGTTGAAACTGTTCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA 3774 0.4452 MTQPPVPSPPPPLQPPPPPPTAPPSQPSDGVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMARVQQTAPSTSPLTPPSQNLPAHGIDPTKIQLPCASCKAILNVPHGLSRFSCPQCKVDLAVDLSKVKQFFAPPPLEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPDPTYDPKTKDNLESSKALSCLQIETVVYACQRHLHHLPNGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDAGATCIEVHALNKLPYSKLDSKSVGIKEGVVFLTYNSLIASSEKGRSRLQQLVQWCGPGFDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLEIQDKLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMEMYKKAAEFWAELRVELLSASAFLNDKPNTSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALVDEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSLKGRVRKAAKWQPPSDEESDEESETDSGIESNDSDEEFQICEICTTEEERKKLLQCSCCGKLVHSACLMPPIGDVVPEEWSCHLCKEKTDEYLIARQAYIAELQKRYDAALERKTKILEIIRSLDLPNNPLDDITDQLGGPDKVAEITGRRGMLVRGPTGKGVTYQARNTKDITMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCSSDRPDTIQDFIIQAKAALVSVGIVRDSTLGNGKDPGKLSGRIIDSDMHEVGRFLNRLLGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKTVHVDQLTAASTVLFTFILDRGITWESASSMLNEKQKDGLGSANDGFYESKREWLGKRHFILAFESSASGMYKIVRPPVGESNREMPLSELKSKYRKVSSLEKAQTGWEEEYEVSSKQCMHGPKCKIGNFCTVGRRLQEVNVLGGLILPVWGTIEKALSKQARLSHRRLRVVRIETTVDSKRIVGLLVPNAAVETVLQGLAWVQEIDD 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01677 1257 MobiDBLite consensus disorder prediction 604 652 - -
Trre15g01677 1257 MobiDBLite consensus disorder prediction 161 206 - -
Trre15g01677 1257 PANTHER STRAWBERRY NOTCH-RELATED 31 1251 IPR026741 GO:0006355
Trre15g01677 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 422 IPR027417 -
Trre15g01677 1257 Gene3D - 205 409 IPR027417 -
Trre15g01677 1257 SUPERFAMILY FYVE/PHD zinc finger 649 708 IPR011011 -
Trre15g01677 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 802 907 IPR027417 -
Trre15g01677 1257 MobiDBLite consensus disorder prediction 1 26 - -
Trre15g01677 1257 SMART PHD_3 658 704 IPR001965 -
Trre15g01677 1257 MobiDBLite consensus disorder prediction 635 652 - -
Trre15g01677 1257 Pfam P-loop containing NTP hydrolase pore-1 179 479 IPR039187 -
Trre15g01677 1257 Pfam C-terminal domain on Strawberry notch homologue 747 1036 IPR026937 -
Trre15g01677 1257 ProSiteProfiles Zinc finger PHD-type profile. 656 706 IPR019787 -
Trre15g01677 1257 ProSitePatterns Zinc finger PHD-type signature. 659 703 IPR019786 -
Trre15g01677 1257 FunFam Protein strawberry notch homolog 2 210 410 - -
Trre15g01677 1257 MobiDBLite consensus disorder prediction 1 30 - -
Trre15g01677 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 726 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01677 Trre-Chr15 13455496 13473692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01677 K26273 - gmx:100808670 2242.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01677 15 13455496 13473692 Trre15g01677 15 13455496 13473692 ECH