Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1937 ATGTCCCATCACCAAGGGGGTGATGCTGAATATATGGCGGATGAATGTGAGATGGAAGATGTAGAAGATGAAATGGATGATGAATCTATTAATAGAGAAAGGGGTGGCGTAGAGTCTGACGTGGATGAATATGATTACTCGAGTGGTAAGCCTGTAGACACTACAGCTGCTCAGGCTAGAAGAGGACAAGACATCCAGGGCATTCCTTGGGAAAGCCTTAGCATCACTAGAGAAAGATATCGGCAAACTAGGCTTGAGCAATAcaagaattatgaaaatatcCCTGGTTCAGGGGACAAGTCGGGGAAGGATTGTAAGAATACCAAAAAAGGATGCTCATTTTATGACTTCAGGAAAAATTCAAGATCAGTAAAGTCAACAATTCTTCATTTTCAGTTGAGGAATTTGGTATGGGCCACATCAAAGCATGATGTATACCTTATGTCACAGTTTTCAATAATGCATTGGTCCTCTTTGACTTGCAAAATTTCAGAAGTACTTAATGTTTCGGGACACGTTGCACCATCAGAGAAACATCCTGAAAGTCTAGTAGAAGGATTTACTCACACTCAAGTCAGTACACTTGCAGTGAAAGAGAAGCTTCTAGTTGCTGGAGGATTTCAGGGTGAACTTATTTGTAAGCATGTAGATCGACCTGGTGTTAGCTTTTGCACAAGAACAACTTATGATGATAATGCTATCACCAATGCCATTGAGATTTATGCTTGTCCTAGTGGTGCAGTTCATTTCACAGCCTCAAATAATGATTGTGGAGTCAGGGACTTTGATATGGAGAAATTTCAGCTTTCTAAGCATTTTCGCTTTCCCTGGCCAGTGAATCATTCTTCTCTCAGCCCAAATGGTAAACTACTACTAATTGTTGGAGACAATCCTGAAGGTATGTTGGTGGACTCCcgaaatggaaagACAATTGATTCCTTATCTGGGCACTTCGATTATTCATTTGCATCATCATGGCATCCTGATGGTGTAACCTTTGCCACCGGAAACCAGGACAAAACCTGCCGTATTTGGGACTTGCGGAATTTATCCAAGTCAGTGGCTGTGCTGAAGAGCAACCTAGGAGCCATCCGTTCAATCCGGTATACTTCGGATGGCCAGTTTATGGCTGTGGCAGAGCCTGCAGATTTTGTACATGTCTATGATGTAAAAAGTGGGTATGAGAAGGAACAGGAAATTGATTTCTTTGGGGAGATATCAGGCTTATCTTTCAGTCCAGACACTGAGTCCCTGTTTATTGGGGTCTGGGATCGCACTTATGGTAGCCTTCTTGAGTATGGCCGGTGTCGGCAGTATTCATACCTTGATTCACTGATTTAA 1341 0.4161 MSHHQGGDAEYMADECEMEDVEDEMDDESINRERGGVESDVDEYDYSSGKPVDTTAAQARRGQDIQGIPWESLSITRERYRQTRLEQYKNYENIPGSGDKSGKDCKNTKKGCSFYDFRKNSRSVKSTILHFQLRNLVWATSKHDVYLMSQFSIMHWSSLTCKISEVLNVSGHVAPSEKHPESLVEGFTHTQVSTLAVKEKLLVAGGFQGELICKHVDRPGVSFCTRTTYDDNAITNAIEIYACPSGAVHFTASNNDCGVRDFDMEKFQLSKHFRFPWPVNHSSLSPNGKLLLIVGDNPEGMLVDSRNGKTIDSLSGHFDYSFASSWHPDGVTFATGNQDKTCRIWDLRNLSKSVAVLKSNLGAIRSIRYTSDGQFMAVAEPADFVHVYDVKSGYEKEQEIDFFGEISGLSFSPDTESLFIGVWDRTYGSLLEYGRCRQYSYLDSLI 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1937 446 MobiDBLite consensus disorder prediction 12 27 - -
Ssu8g1937 446 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 1 446 - -
Ssu8g1937 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 349 - -
Ssu8g1937 446 SUPERFAMILY WD40 repeat-like 198 426 IPR036322 GO:0005515
Ssu8g1937 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 355 IPR001680 GO:0005515
Ssu8g1937 446 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 446 - -
Ssu8g1937 446 SMART WD40_4 350 389 IPR001680 GO:0005515
Ssu8g1937 446 SMART WD40_4 307 346 IPR001680 GO:0005515
Ssu8g1937 446 Gene3D - 235 440 IPR015943 GO:0005515
Ssu8g1937 446 Pfam WD domain, G-beta repeat 309 346 IPR001680 GO:0005515
Ssu8g1937 446 MobiDBLite consensus disorder prediction 28 47 - -
Ssu8g1937 446 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1937 Ssu-Chr8 50322406 50326004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1937 302 426 Miscellaneous Gene Families AT5G08390 28.000 1.99e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1937 - - gmx:100792497 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1937 8 50322406 50326004 Ssu8g1937 8 50322406 50326004 ECH