Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3610 ATGCTAGCCTCTCTTGAAAAACTTGGCTTACCAAAACAACCAAGGAATCAACATTCTCAGCAATCAGAAGCAGCAAATTCCCTTGCCAACACTCGGGCAAGTCTTGGGCAACCTCGACTTCAAAGGACCAAACCAATTATATGGTGTGCTGCAGTGCTGTGCTTCATATTCAGCCTAGTACTTATCTTCTTTGGAATTGCAACATTGATTTTCTACTTTGCCATCAAACCACGAAACCCCACGTTTGACATTCCCAATGCAAGCCTCAATGTAGTATATTTTGACTCACCACAGTACCTCAATGGTGAATTCACTCTCCTTGCAaatttttccaatcctaacagGAGAATTGGGGTGAGGTTTGAGTCCTTGACTATTGAGCTTTTCTACTCAGACAGGCTCATATCATCACAGACAATCAAGCCTTTTACTCAAAGGCCAAGGGAAAACAGGTTGCAATCAGTGAACTTGATATCCAGCTTAGTGTTTTTGCCTCAAGATGTTGGTGTAAAACTTCAAAGGCAAGTGGAGAGTGACAGGGTCAACTACAATGCAAGGGGAACATTTAAGGTGAGGTTCAATATGGGCCTTATCCATTTATCTCACTGGCTGCATACAATATGTCAGATAGAGATGACTAGTCCTCCAACGGGTATTCTAGTAGCCAGACAATGCATAACAAACCGATGA 690 0.4145 MLASLEKLGLPKQPRNQHSQQSEAANSLANTRASLGQPRLQRTKPIIWCAAVLCFIFSLVLIFFGIATLIFYFAIKPRNPTFDIPNASLNVVYFDSPQYLNGEFTLLANFSNPNRRIGVRFESLTIELFYSDRLISSQTIKPFTQRPRENRLQSVNLISSLVFLPQDVGVKLQRQVESDRVNYNARGTFKVRFNMGLIHLSHWLHTICQIEMTSPPTGILVARQCITNR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3610 229 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 16 229 - -
Ssu6g3610 229 Pfam Late embryogenesis abundant protein 111 199 IPR004864 -
Ssu6g3610 229 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 16 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3610 Ssu-Chr6 79776503 79777192 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3610 - - pvu:PHAVU_008G282100g 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3610 6 79776503 79777192 Ssu6g3610 6 79776503 79777192 ECH
Ssu9g1123 9 42990209 42990979 Ssu6g3610 6 79776503 79777192 PCT