Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04293 ATGGTCTGTTTTCTTTCTTTCTTTCTTTTCTTTCTCTCTATCTTTCTTTTTCTTTTCCTTAACAGCAGTGTTGGGAGAAAATCTCAGGAGCGCGAGGAGAATCCTGATAATACGTATGCACAATATGTGATTCTCAATTCATTGATAAAAGAAAGCGAGAGCACCACCGCTGAGGAGGTTAGGTTGGGTAATAAGGACATACAAGGAATACAGTGGGATAAAGTGAACCGTAACAGTAGGGAATTCAGAAGAGCAAGACTAGAGGTAAGCCAGAAAGAATATGAAAAGGAGTTCTCTGAAGCTGCAAGGAACGTGGAGGGAGTTATATCACCAGAAAAAGGAGGGATGTATTATGATTTCTGTCAATATGCTAGCGCTTTGGCTCCAAGAGCACAATATCACTCAACGGGTGACTTTCTTTGCTCGACATCAAAGCACGACGTGTATTTTTCTGCATATGACAGAATTCATCACTGGAATGCATTAACTTCCAAGACCTCTGAATCTGTAGTCTTGGATTTATCAGGGCATGTAGCTCCATCTGAGCCTGAGGAGTACCCAGGAAACCGCATGGAAGGATTTACTGAGGTACAAGTTACTAAAATGGCTACATGGGATAATTTGTTGATTGTTGGAGGCGTTGAAGGAGATCTTATTGTCAAGAGTACTTCGTTGCGGCCCAAAAATGGAGACATGCTTGTAGTTGTTGGAGACAGCACAGAAGGGAAATTAGTGGACCCTGAAACCGGAATGACTATCGCACCTTTACCTGGACACACTGGTGATTCAAAAACAGCAGCGTGGCATCCTGATGGGTGCTTTTTTGCCACGGGAAGCGAAGACAGAACATGTCGCCTTTGGGATATTCGGAATATGAAAACTGATGTTGTTCTTTTAAAGGGCAACATGGGAGGTATTAACTCAATACGTTTCACATCTGATGGGCAATTTATGGCAATGGCTGAGGATGTTGATTTTGTGCATGTCTATGATGTAAAGAGTGGGTTTGGGAAGGAGCAGGAGATCGAATTTTTTGGGTATGTCTCTGGTTTATCTCTTAGTCCTGACGCAGAATCGCTTTTTATCAGTATCACCGCAGATACCTTTCCAAACCTTTTAATGTACAATCGACGCGCAGAATGTGAGTGTTCGTCTTCGAATTCTTAG 1167 0.4242 MVCFLSFFLFFLSIFLFLFLNSSVGRKSQEREENPDNTYAQYVILNSLIKESESTTAEEVRLGNKDIQGIQWDKVNRNSREFRRARLEVSQKEYEKEFSEAARNVEGVISPEKGGMYYDFCQYASALAPRAQYHSTGDFLCSTSKHDVYFSAYDRIHHWNALTSKTSESVVLDLSGHVAPSEPEEYPGNRMEGFTEVQVTKMATWDNLLIVGGVEGDLIVKSTSLRPKNGDMLVVVGDSTEGKLVDPETGMTIAPLPGHTGDSKTAAWHPDGCFFATGSEDRTCRLWDIRNMKTDVVLLKGNMGGINSIRFTSDGQFMAMAEDVDFVHVYDVKSGFGKEQEIEFFGYVSGLSLSPDAESLFISITADTFPNLLMYNRRAECECSSSNS. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04293 388 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 297 IPR001680 GO:0005515
Seca6g04293 388 Pfam WD domain, G-beta repeat 255 288 IPR001680 GO:0005515
Seca6g04293 388 SUPERFAMILY WD40 repeat-like 132 367 IPR036322 GO:0005515
Seca6g04293 388 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 221 381 - -
Seca6g04293 388 SMART WD40_4 292 331 IPR001680 GO:0005515
Seca6g04293 388 SMART WD40_4 249 288 IPR001680 GO:0005515
Seca6g04293 388 Coils Coil 84 104 - -
Seca6g04293 388 Gene3D - 129 386 IPR015943 GO:0005515
Seca6g04293 388 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04293 Seca-Chr6 110670231 110673736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04293 243 347 Miscellaneous Gene Families AT5G08390 33.333 5.20e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04293 - - gmx:106795767 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04293 6 110670231 110673736 Seca6g04293 6 110670231 110673736 ECH