Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00978 ATGATTGAAAAGATATCGGTTGTCAAAATCAGAAGGGCATCAAGAAACATGTCTCAATACCATGGTGATGAAATGGACTATGCGGCAGATGATAATGAAATGGCAGAGGTAGAAGATGATATGTATTTTCGCGGCAGAGCATTTGGTGAATCAGATTCAGATGATGATGACGACTATGAATATGACCCTTTGGAAGACCGAATAACAGATACCACTGCTGCAGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGACCATTAGTCGTGAGAAATATAGACAAACCAGACTAGAGCAGTACAAGAATTATGAAAATATACCACAATCTGGGGAAATGTCAGAGAAGGAATGCAAAGCAACAGATAAAGGGGGAAATTATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAATTGAGGAATTTAGTTTGGTCAACATCAAAACATGACGTATATCTTGTTTCAAATTACTCAATTATTCACTGGTCTTCATTAAGTTCTAAGAGGTCTGAAGTCTTGAATGTATCAGGGCATGTAGCTCCATGTGAGAAACATCCTGGAAGCCTCTTGGAAGGTTTTACTCAGACACAAATCAGTACACTGTCAGTACGGGATAACTTGTTGATTGCTGGAGGCTTTCAAGGAGAACTTATTTGCAAGTACTTAGACCGGCCTGGAGTTAGTTTTTGTACCCGAACTACGTATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGACCATCCAAGTGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTTTGATATGGAGAGGTTTCAGCTTTCAAAGCATTTCTCCTTTCCTTGGCCAGTAAATCATACTTCATTAAGCCCTGATGGGAAACTACTTGCAATTGTTGGAGACAACCCAGAAGCACTACTGGTGGATTCTCAAACAGGAAAGACTATCACACCTTTGCATGGACACTTAGATTTCTCATTTGCATCCGCATGGCATCCTAATGGGCAAATATTTGCTACCGGGAACCAAGACAAAACATGTCGTGTTTGGGATGTTCGGAACTTGTCAAAATCTGTTGCTGTTCTTAAAGGCAACCTTGGAGCTATTCGTTCAATACGTTTCACGTCTGATGGTCAGTTCATGGCGACGGCAGAGCCAGCCGACTTCGTGCATGTTTACGATGCAAAGCATGGGTTTGAAAAGGAGCAGGAGATTGATTTTTTTGGGGAGATCTCTGGTGTATCCTTTAGCCCTGACACAGAATCACTTTTTATTGGTGTTTGGGACCGCACCTATGGAAGCCTTCTACAGCTGAATCGACGCAGAAACTACATGTATCTGGACTGCTTGTAA 1389 0.4154 MIEKISVVKIRRASRNMSQYHGDEMDYAADDNEMAEVEDDMYFRGRAFGESDSDDDDDYEYDPLEDRITDTTAAEARRGKDIQGIPWDRLTISREKYRQTRLEQYKNYENIPQSGEMSEKECKATDKGGNYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVSNYSIIHWSSLSSKRSEVLNVSGHVAPCEKHPGSLLEGFTQTQISTLSVRDNLLIAGGFQGELICKYLDRPGVSFCTRTTYEDNAITNAVEIYDHPSGAVHFMASNNDSGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLAIVGDNPEALLVDSQTGKTITPLHGHLDFSFASAWHPNGQIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGQFMATAEPADFVHVYDAKHGFEKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLLQLNRRRNYMYLDCL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00978 462 FunFam WD-40 repeat family protein 244 460 - -
Phco11g00978 462 Pfam WD domain, G-beta repeat 326 363 IPR001680 GO:0005515
Phco11g00978 462 SUPERFAMILY WD40 repeat-like 216 443 IPR036322 GO:0005515
Phco11g00978 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 366 - -
Phco11g00978 462 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 23 461 - -
Phco11g00978 462 SMART WD40_4 367 406 IPR001680 GO:0005515
Phco11g00978 462 SMART WD40_4 324 363 IPR001680 GO:0005515
Phco11g00978 462 SMART WD40_4 283 321 IPR001680 GO:0005515
Phco11g00978 462 Gene3D - 244 457 IPR015943 GO:0005515
Phco11g00978 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 372 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00978 Phco-Chr11 7193598 7199183 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00978 11 7193598 7199183 Phco11g00978 11 7193598 7199183 ECH