Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0506 ATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGATGCTGATGCATTTTTTGTACAATGCTTTCAGGCTGGTTTTGCTGGTGATGATGCCCCAAGGGCTGTATTCCCTAGCATTGTTGGGCGACCTCGCCACACGGGAGTTATGGTTGGGATGGGTCAGAAGGATGCTTATGTGGGTGATGAAGCCCAGTCAAAAAGAGGTATCCTTACCTTGAAGTACCCCATCGAGCATGGCATAGTAAGCAATTGGGATGATATGGAGAAGATTTGGCATCACACTTTCTACAATGAACTCCGTGTTGCCCCCGAGGAACACCCGATACTCCTTACTGAGGCACCACTTAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATCATGTTTGAAACTTTCAATGCGCCTGCTATGTATGTTGCCATCCAGGCTGTTCTGTCTCTCTATGCTAGCGGGCGTACAACAGGTATTGTGCTCGATTCTGGTGATGGTGTGAGCCATACAGTGCCCATTTATGAAGGGTACGCTCTCCCTCATGCAATCCTACGGCTGGACCTTGCTGGACGTGACTTGACAGATCACTTGATGAAAATTCTTACTGAGAGAGGATACTCTTTCACTACCTCTGCTGAACGGGAAATTGTACGTGATATGAAGGAGAAACTAGCTTATGTGGCCCTTGATTATGAGCAAGAGTTGGAAACTTGCAAGAGTAGTTCAGCAGTGGAGAAGAGCTACGAGTTGCCTGATGGACAAGTGATCACAATCGGCGCCGAGAGATTCAGATGCCCAGAAGTACTTTTCCAGCCATCTTTCATCGGTATGGAAGCTACTGGAATTCATGAAACAACCTACAACTCTATCATGAAATGTGATGTTGATATTAGGAAGGATCTATATGGAAATATTGTGCTCAGTGGTGGCTCAACTATGTTCCCTGGGATCGCTGATCGTATGAGCAAGGAAATTACCGCCCTTGCTCCAAGTAGCATGAAGATCAAGGTGGTTGCACCTCCCGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATTTTGGCATCACTCAGCACCTTCCAACAGATGTGGATTTCCAAGGGTGAATATGATGAATCTGGTCCTGCAATTGTTCACCGTAAGTGCTTCTGA 1170 0.4667 MADAEDIQPLVVDNGTGMVKADADAFFVQCFQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTSAEREIVRDMKEKLAYVALDYEQELETCKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEATGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0506 389 CDD NBD_sugar-kinase_HSP70_actin 88 195 - -
Lele13g0506 389 Pfam Actin 6 389 IPR004000 -
Lele13g0506 389 ProSitePatterns Actins signature 1. 67 77 IPR004001 -
Lele13g0506 389 FunFam Actin, alpha skeletal muscle 3 169 - -
Lele13g0506 389 PRINTS Actin signature 129 142 IPR004000 -
Lele13g0506 389 PRINTS Actin signature 250 266 IPR004000 -
Lele13g0506 389 PRINTS Actin signature 40 49 IPR004000 -
Lele13g0506 389 PRINTS Actin signature 75 97 IPR004000 -
Lele13g0506 389 PRINTS Actin signature 63 74 IPR004000 -
Lele13g0506 389 PRINTS Actin signature 154 173 IPR004000 -
Lele13g0506 389 ProSitePatterns Actins and actin-related proteins signature. 118 130 IPR020902 -
Lele13g0506 389 SMART actin_3 7 389 IPR004000 -
Lele13g0506 389 Gene3D Actin; Chain A, domain 4 194 285 - -
Lele13g0506 389 SUPERFAMILY Actin-like ATPase domain 161 389 IPR043129 -
Lele13g0506 389 Gene3D - 152 352 - -
Lele13g0506 389 FunFam Actin, muscle 194 285 - -
Lele13g0506 389 FunFam Putative actin-related protein 5 353 381 - -
Lele13g0506 389 FunFam Major actin 273 352 - -
Lele13g0506 389 ProSitePatterns Actins signature 2. 370 378 IPR004001 -
Lele13g0506 389 PANTHER ACTIN 9 382 IPR004000 -
Lele13g0506 389 Gene3D - 11 383 - -
Lele13g0506 389 SUPERFAMILY Actin-like ATPase domain 6 167 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0506 Lele-ChrLele13 17248840 17250445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0506 1 389 Cytoskeleton Gene Families AT5G09810 93.059 0.0 747