Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0471 ATGCTTAGACCTCGAGACAGGACCGTGCATCCAATCCCTTCTCTGATCGAAACGCAGATTCCCATTCTTTTTCAACCTTCAAATACTCCTTCCTCTTCGCGGCAACTGCGACCAACAATTCCTCTCTTTATCCCTCTCCTATTACACTCACTCTCTCCATCAATAACAACAAGCAAGATGCAGATCTTCGTCAAAACTTTGACCGGAAAGACTATCACTCTCGAGGTTGAGAGTAGTGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCCGGTAAGCAGCTGGAAGATGGTCGCACTCTCGCTGATTATAACATTCAAAAGGAATCAACACTTCATCTGGTCTTGAGGCTTAGAGGAGGAACCATGATTAAAGTGAAGACTCTTACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACCATTGACCGGATCAAGGAACGTGTTGAAGAGAAAGAGGGGATTCCGCCTGTGCAGCAGAGGCTCATATATGCTGGGAAGCAGCTCGCAGATGACAAAACAGCTAAAGAGTACAACATTGAAGGTGGTTCTGTTCTTCACCTGGTGCTTGCCCTTAGGGGTGGTAATCTTTAG 642 0.4564 MLRPRDRTVHPIPSLIETQIPILFQPSNTPSSSRQLRPTIPLFIPLLLHSLSPSITTSKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGNL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0471 213 PRINTS Ubiquitin signature 112 133 IPR019956 -
Lele09g0471 213 PRINTS Ubiquitin signature 70 90 IPR019956 -
Lele09g0471 213 PRINTS Ubiquitin signature 91 111 IPR019956 -
Lele09g0471 213 PANTHER UBIQUITIN 60 137 - -
Lele09g0471 213 Pfam Ubiquitin family 138 209 IPR000626 GO:0005515
Lele09g0471 213 Pfam Ubiquitin family 62 133 IPR000626 GO:0005515
Lele09g0471 213 CDD Ubl_ubiquitin 60 135 - -
Lele09g0471 213 FunFam Polyubiquitin 3 60 135 - -
Lele09g0471 213 Gene3D - 137 213 - -
Lele09g0471 213 Gene3D - 54 136 - -
Lele09g0471 213 SMART ubq_7 60 131 IPR000626 GO:0005515
Lele09g0471 213 SMART ubq_7 136 207 IPR000626 GO:0005515
Lele09g0471 213 FunFam NEDD8 protein 136 213 - -
Lele09g0471 213 SUPERFAMILY Ubiquitin-like 137 211 IPR029071 -
Lele09g0471 213 SUPERFAMILY Ubiquitin-like 57 135 IPR029071 -
Lele09g0471 213 ProSiteProfiles Ubiquitin domain profile. 136 211 IPR000626 GO:0005515
Lele09g0471 213 ProSiteProfiles Ubiquitin domain profile. 60 135 IPR000626 GO:0005515
Lele09g0471 213 CDD Ubl_NEDD8 138 211 IPR038738 -
Lele09g0471 213 ProSitePatterns Ubiquitin domain signature. 162 187 IPR019954 -
Lele09g0471 213 ProSitePatterns Ubiquitin domain signature. 86 111 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0471 Lele-ChrLele09 3460337 3462963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0471 138 211 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.162 1.48e-26 97.4