Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0486 ATGTCTACACTGCTGCTCGGCATAGGGGAGGACAAAGGTCAAAGCGATGTCAGTTTGTTGGCCTCCTCAACCACCATGGAAAGTGGTTGCCTCAACAGCTCCAAACTGAAAGAACGCAACTACATGGGATTATCTGTTTGTTCTTCAGTGGACAGCTCAGCTCAGTCCTTCTCGGATGAGAGTAAAACTAGGCTGAACCTAAAAGCTACAGAGCTGAGGCTTGGGCTTCCGGGATCTCAGTCTCCTGAAAGAGAAGACTCAGATCATCGCTGCTTTGAAAGTTCTCAATTTGATGAGAAACCTCTTTTTCCCTTGCATCCTTCAACGGACGATCAACACCGCTCGTCAAAGAATGTTGTTCTGGGTAACAAAAGAGGGTTCTCAGATGCTATGAATGAGGTCTCCAAGTGGCAATTCCTAGCAAATTCGGAGGGGAATACAATTCTGTCACCTAGACCATCTCCTAATTTAGGATTGAAAACTAGTTCTAGGCTTGATAAAGCGAAAGAAGCAGCACCACCAAAGGTGGAACAAGAGAGTCCCCATGTTGTGAACGAAACCAAACCAAACCATAGTGTTTCTGCAAATAATAGCGGTACACCTGCTTTTAAGGCAGAGGTTGTGGGTTGGCCTCCTATTAGATCATTTAGGAAAAATTCATTGGCCACCGCTAAGAAAAATACTGAAGAAGTAGATGGAAAAGCACTGTTTGTCAAGGTCAATGTGGATCTAATGGAACTCTGGGACAAAGAAGGTGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTGTTGAAACATGCAGGAGGATGAGGATCATGAAGAGTTCTGAAGCCATTGGTTTAGCTCCCAGGAAGAAATAA 867 0.4487 MSTLLLGIGEDKGQSDVSLLASSTTMESGCLNSSKLKERNYMGLSVCSSVDSSAQSFSDESKTRLNLKATELRLGLPGSQSPEREDSDHRCFESSQFDEKPLFPLHPSTDDQHRSSKNVVLGNKRGFSDAMNEVSKWQFLANSEGNTILSPRPSPNLGLKTSSRLDKAKEAAPPKVEQESPHVVNETKPNHSVSANNSGTPAFKAEVVGWPPIRSFRKNSLATAKKNTEEVDGKALFVKVNVDLMELWDKEGDWMLVGDVPWEMFVETCRRMRIMKSSEAIGLAPRKK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0486 288 SUPERFAMILY CAD & PB1 domains 249 276 - -
Lele03g0486 288 MobiDBLite consensus disorder prediction 185 200 - -
Lele03g0486 288 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 249 282 IPR003311 GO:0005634|GO:0006355
Lele03g0486 288 MobiDBLite consensus disorder prediction 163 184 - -
Lele03g0486 288 MobiDBLite consensus disorder prediction 82 96 - -
Lele03g0486 288 Gene3D - 245 287 - -
Lele03g0486 288 MobiDBLite consensus disorder prediction 145 161 - -
Lele03g0486 288 MobiDBLite consensus disorder prediction 72 116 - -
Lele03g0486 288 MobiDBLite consensus disorder prediction 145 200 - -
Lele03g0486 288 Pfam AUX/IAA family 69 243 IPR033389 -
Lele03g0486 288 Pfam AUX/IAA family 249 286 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0486 Lele-ChrLele03 2831905 2833872 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele03g0486 AUX_IAA 1.1e-22 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0486 03 2831905 2833872 Lele03g0486 03 2831905 2833872 ECH
Lele01g0478 01 2820835 2823052 Lele03g0486 03 2831905 2833872 hybridization
Lele02g0463 02 2783158 2785142 Lele03g0486 03 2831905 2833872 hybridization