Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01292 ATGGGCAACCTCTTTGGCAAAAATAAAAAGCATGCTTCAAGCCATGGTAAAGGAAGAGGTGGAAGAATCTTCACTAACGTGACCACAAGAGATTTACCATCGCAAATATCTTCATCCTTCGCACCACCAATATTATACCCATCTCTGGAACCACCCTCGCCGCCGCCACCACCACCACCGCCGGTGCGATCTCAATCCATTTCCAGGAAACCAAGTCTCTGGAGAGTTGACTCTAAACAAAGCTCTTCAGACATGAACAAGAAGCAATCTGCAGCCAAGAAGTATGCTCTTATCCGTGATAACTTCTCTACCCTTGAACAGGTCACAACAGCCTTGAGGAAAGAAGGATTAGAATCATCAAATCTCATCCTTGGAATTGATTTTACAAAGAGTAATGAATGGACTGGCAGAATCTCATTCAATAAAAGAAGCCTGCATGCTGTTGGAACTACACCTAATCCTTATGAGAAGGCCATTTCTATTATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGCTTTGGTGATGCAACTACCCATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATTCACCTTGCCATGGCTTTGAGGAAGTCTTGGCTTGCTACCAGAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCTGTGATTGAAGCTGCTATAGACATAGTTGAGAAAAACCATGGCCAATTCCATGTGTTGGTTATAGTTGCTGATGGCCAGGTTACAAGAAGTGTCAACACTGGAGATGGAGAACTAAGTCCTCAAGAAGAAAAGACAATTAAAGCAATAGTTGATGCAAGTGCATATCCTCTTGCAATAGTTCTAGTAGGAGTTGGTGACGGGCCTTGGGAAGACATGAGAAAGTTTGATGACAGGATACCTGCACGTGATTACGACAATTTTCAGTTTGTTAATTTCACAGAAATCATGTCGAGAAACATAAGCCCTTCCGAGAAAGAAGCAGCTTTTGCTTTAACTGCTCTCATGGAGATCCCCTTCCAATATAAAGCAACCATGGAATTTGGATTACTCGGACGTGTGACAGGAAGAGCAAAGAGAATAGTTCCAAAGCCTCCTCCTCTGCCCTATTCTAGGCCTGCACTTCCACCAGCACGTCTTCCCAGCAGTGCTGCTGCAGCATCCTCCATTGATGACCAAAACCAATCGGTATGCCCTGTTTGTTTGACTAATCCAAGAGACTTGGCCTTCGGGTGTGGCCACATGACTTGCAGGGATTGTGGATACAAGTTAAGTAATTGTCCGATGTGCCGAGAGAGGATCAATACTCGTCTCAGGGTGTACAGCGGATGA 1350 0.4407 MGNLFGKNKKHASSHGKGRGGRIFTNVTTRDLPSQISSSFAPPILYPSLEPPSPPPPPPPPVRSQSISRKPSLWRVDSKQSSSDMNKKQSAAKKYALIRDNFSTLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNKRSLHAVGTTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKNHGQFHVLVIVADGQVTRSVNTGDGELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMRKFDDRIPARDYDNFQFVNFTEIMSRNISPSEKEAAFALTALMEIPFQYKATMEFGLLGRVTGRAKRIVPKPPPLPYSRPALPPARLPSSAAAASSIDDQNQSVCPVCLTNPRDLAFGCGHMTCRDCGYKLSNCPMCRERINTRLRVYSG* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01292 449 MobiDBLite consensus disorder prediction 27 42 - -
Lapu5g01292 449 SUPERFAMILY vWA-like 120 303 IPR036465 -
Lapu5g01292 449 PANTHER COPINE FAMILY PROTEIN 1 76 425 - -
Lapu5g01292 449 SMART VWA_4 119 321 IPR002035 -
Lapu5g01292 449 Pfam Zinc finger, C3HC4 type (RING finger) 401 441 - -
Lapu5g01292 449 SUPERFAMILY RING/U-box 396 443 - -
Lapu5g01292 449 MobiDBLite consensus disorder prediction 66 89 - -
Lapu5g01292 449 Pfam Copine 144 357 IPR010734 -
Lapu5g01292 449 ProSiteProfiles Zinc finger RING-type profile. 404 437 IPR001841 -
Lapu5g01292 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 448 IPR013083 -
Lapu5g01292 449 MobiDBLite consensus disorder prediction 45 65 - -
Lapu5g01292 449 SMART ring_2 404 436 IPR001841 -
Lapu5g01292 449 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01292 Lapu-Chr5 25830946 25842994 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01292 K16280 - gmx:100790153 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01292 5 25830946 25842994 Lapu5g01292 5 25830946 25842994 ECH