Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1238 ATGGGTTGGTTTTGTTGCCAAGGGAAATCAAGCAAAAAATCGGTTGCCGAAGAAGACTACCGCGACAGCCTCGACCAGAAACCCACCAATTTCACCGCGACAGATAGCGTAAAAGTTGATTTCAAAGTGAATGGGAATAAGGAAGATGGTTCTAAAGGTGATCAACTTGCTCTGGACGTGAAGAGTTTAAATTTGAAAGAGGAGGTTTCTCAGGATAGAAAAGATAATGGCAATCGGGCACAGACATTCAGTTTTAATGAACTTGAAGCTGCGACCGGAAATTTTAGGGTGGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAATTAACCAGGTTGTAGCTATAAAGCAACTTGACCCTAACGGACTTCAAGGGATTCGTGAATTTGTTGTTGAAGTGTTGACATTGAGTTTGGCAGACCACACTAATCTTGTGAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAGTACATGCCATTAGGATCTTTGGAGGACCATTTGCTTGATATTCGACCAGGTAGAAAACCACTTGATTGGAACACAAGAATGAAAATAGCAGCTGGCGCAGCTAGGGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTAATATATCGTGACTTGAAATGTTCTAACATTTTGTTAGGAGAGGGATATCATCCTAAATTGTCCGATTTTGGCTTGGCAAAAGTAGGCCCAAGTGGTGATAAGACCCATGTTTCAACTAGGGTTATGGGCACATATGGGTATTGTGCCCCAGATTATGCAATGACAGGTCAGTTGACATTCAAGTCAGATATTTACAGCTTCGGGGTTGTTCTTTTGGAGCTTATTACAGGCCGGAAAGCCATTGACCATACAAAACCTGCCAAAGAACAAAATCTAATTGCATGGGCAAGACCCTTGTTCAGAGACAGGAGGAAATTTTCACGAATGGTTGACCCATTACTTGAAGGTCAATATCCCGTGAGAGGCCTATACCAAGCTCTTGCCATTGCTGCTATGTGTGTTCAAGAGCAGCCTAATATGCGGCCTGTAATAGTTGATGTGGTTACAGCTCTAAATTACCTAGCTTCTCAGAAGTATGATCCACAACTTCATCCTGCACAAACCTCTAGAAGAAGTCCACCTTCTCAGATAATGAAAAGGGATGATGATGCTCATAGACATATTTTAAGCATGGAGCATGAGACAGACAGATCTTAA 1251 0.4237 MGWFCCQGKSSKKSVAEEDYRDSLDQKPTNFTATDSVKVDFKVNGNKEDGSKGDQLALDVKSLNLKEEVSQDRKDNGNRAQTFSFNELEAATGNFRVDCFLGEGGFGKVYKGHLERINQVVAIKQLDPNGLQGIREFVVEVLTLSLADHTNLVKLIGFCAEGEQRLLVYEYMPLGSLEDHLLDIRPGRKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKPAKEQNLIAWARPLFRDRRKFSRMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPQLHPAQTSRRSPPSQIMKRDDDAHRHILSMEHETDRS* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1238 416 Pfam Protein kinase domain 100 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1238 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Gso11g1238 416 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Gso11g1238 416 ProSiteProfiles Protein kinase domain profile. 95 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1238 416 SMART serkin_6 95 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1238 416 SUPERFAMILY Protein kinase-like (PK-like) 81 390 IPR011009 -
Gso11g1238 416 MobiDBLite consensus disorder prediction 393 416 - -
Gso11g1238 416 Gene3D Transferase(Phosphotransferase) domain 1 172 389 - -
Gso11g1238 416 PANTHER OS07G0668900 PROTEIN 1 401 - -
Gso11g1238 416 Gene3D Phosphorylase Kinase; domain 1 65 171 - -
Gso11g1238 416 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 401 - -
Gso11g1238 416 MobiDBLite consensus disorder prediction 380 416 - -
Gso11g1238 416 CDD STKc_IRAK 101 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1238 Gso-Chr11 11271725 11276405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1238 61 374 Glycoside Hydrolase AT3G07070 62.975 3.23e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso11g1238 Pkinase 3.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1238 - - gmx:100811821 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1238 11 11271725 11276405 Gso11g1238 11 11271725 11276405 ECH
Gso12g0605 12 5568127 5572595 Gso11g1238 11 11271725 11276405 GST
Gso15g0382 15 3449465 3453165 Gso11g1238 11 11271725 11276405 PCT
Gso11g3420 11 50145133 50148902 Gso11g1238 11 11271725 11276405 PCT
Gso11g1238 11 11271725 11276405 Gso15g0382 15 3449465 3453165 PCT
Gso11g1238 11 11271725 11276405 Gso11g3420 11 50145133 50148902 PCT