Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0326 ATGTCTAGACCATTAGAACATGATTACATAGGCTTGGCAGCAGAGAAGCCGTCCATGGAAAGAAGTTCTGATAAAATTTCCTCTACTGCTGCTTCCTCTACCCTCTCCACTGAGGAAGAAAACAGTTCTTCTCTCAACTTCAAGGAGACAGAGCTCAGGCTTGGCCTCCCTGGTTGCCGGTCTCCCGAGAGAAAAGCAGCAACTGGGCTCTCTCTTTTCGGTAAGGATTTGCAGAATAAGCACAATGGGTGTTCTGCTTCTGCAAGCCCTTTGAAGAACCTCGTGGCTGGGGCTAAGAGGGGCTTTGCTGATGCCATTGATGGTTCCTCTGGGAATTGGGTTTTCTCTGTGAGGGATGGATCTGAGGGTGATTTGGGAAAAGGAGCTGCTTTGTTCTCTCCCAGAGGTGGGAATGTTGGGAAGCCTCTTCCTGGTTTAGAGGGTAAAAGTAACACCCAGCTACCTGCTTCTACCTCTGCGCAAAGCATCAAAGAGGTTGGAATAGTTCCTCAATCTGCCAACACGGTTCAAGAGAAGAAACCTCAGGTCGCTGCGACAAATGAACATGGCAGTGCTCCTGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGGTCTTTTCGAAAGAACAGCATGGCCTCTTCTAATTTGACAAAGAACAATGATGAAGGTGAGGGTAAAGCGGGTCTCTATGTGAAGGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTTAAAACCTACACCAACTATGTGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACCTGCTTTACCATTGGTCAATGCAGTTCTCGAGGACTTCCTGGCAAAGATGGGCTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGCTCTGAATACGTGCTTACATATGAAGATAAGGATGGAGATTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTCACGGACACATGCAGAAGACTGAGGATCATGAAAGGTTCTGAGGCAATTGGGTTAGCTCCAAGGGCCATGGAAAAATCCAGAAACCAAAACTAG 1053 0.4777 MSRPLEHDYIGLAAEKPSMERSSDKISSTAASSTLSTEEENSSSLNFKETELRLGLPGCRSPERKAATGLSLFGKDLQNKHNGCSASASPLKNLVAGAKRGFADAIDGSSGNWVFSVRDGSEGDLGKGAALFSPRGGNVGKPLPGLEGKSNTQLPASTSAQSIKEVGIVPQSANTVQEKKPQVAATNEHGSAPAAKAQVVGWPPIRSFRKNSMASSNLTKNNDEGEGKAGLYVKVSMDGAPYLRKVDLKTYTNYVELSSALEKMFTCFTIGQCSSRGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDTCRRLRIMKGSEAIGLAPRAMEKSRNQN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0326 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 44 337 IPR003311 GO:0005634|GO:0006355
Glsi07g0326 350 Pfam AUX/IAA family 49 341 IPR033389 -
Glsi07g0326 350 MobiDBLite consensus disorder prediction 1 22 - -
Glsi07g0326 350 MobiDBLite consensus disorder prediction 23 48 - -
Glsi07g0326 350 MobiDBLite consensus disorder prediction 1 48 - -
Glsi07g0326 350 Gene3D - 225 343 - -
Glsi07g0326 350 SUPERFAMILY CAD & PB1 domains 229 331 - -
Glsi07g0326 350 FunFam Auxin-responsive protein 225 342 - -
Glsi07g0326 350 ProSiteProfiles PB1 domain profile. 230 332 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0326 Glsi-ChrGlsi07 2175223 2177770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0326 234 340 B3 DNA Binding Superfamily AT4G23980 30.841 3.18e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi07g0326 AUX_IAA 1.6e-90 CL0072