Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00009 ATGAAGGATCCGGTGGAGGATCAAGTGAAATCTAATAGTAGGGTTCTGCAGAAATCCACAAACCTTAGAAGAAAGGGTACAAGAAGAAGCCAATGCAAATCAGATAAATTACAGGATACAATACTTGATTCAGAACTTGGTTCTTCTGCTTCTTGCAAAAGTCTTGTGTTTCCTACGAGGCCTGGTTATGGCCAGGTGGGGACAAAGTGTCTGGTCAAAGCTAATCACTTCCTTGCAGATATATCAGCATCCAACTTGAGCCATTACAGTGTTAAAATAACACCTGAAGTTACTTTTCGTAAAACAAGCAAAGCTATCGTAGCTGAGTTAGTGAGGCTTCATAGGAACACTGACTTGGGGATGAGGCTCCCTGTTTATGATGGAGGAAGAAATCTTTACACTGCTGGTTTGCTTCCTTTTGCGTACAAAGAATTCACCATAATATTGAGGGAGTATGATGAGGGTACCGGTAGTACTAGGGAAAGAGAATTTGAAGTGGCAATCAGGTTTGCAGCTCGTGTTAGCATGCATCAATTGCGTCAACTTCTCAGTGGGAAACAAGTGGACACCCCACAAGAAGCGCTTAGTGTCATTGACATTGTATTGAGGGAGCTTGCGGCCCAGAGCTACGTATCCATTGGGAGGTTTCTCTATTCTCCGGATTTAAGAAAACCACAGCAGCTTGGTGGTGGCTTGGAATCATGGCGTGGCTTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCTCTTAATATTGACATGTCATCAATGGCGTTTATTGAACCACTCCCAGTAATTGACTTTGTTGCTCAAATTTTGGGGAAGGATGTGCAATCAAAGCCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTTGAAGTTACACATAGAGGAAGTTTTCGAAGGAAGTACCGGATATCAGGATTGACATCACAGCCTACAAGAGAACTTAATTTCCCTCTTGATGACAAAATGAACATGAAATCAGTAGTCGATTACTTTCAAGAAGTGTATGGATATACAATCATATATTCTCACCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCCTTGGAGGCATGCAAAATCGTTGGGGGTCAGAGATATACAAAAGGGCTAAACGAAAAGCAGATAACATCTCTGCTAAAGGTCTCATGCCAAAGACCACGTGAACAAGAGACAGATATTCTACAGATAATTCAACAAAGTGATTATGAGTGTAATCCCTATGCAAAGGAGTTTGGTATCAGCATAGACAGCAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGACACTGGAAGAGAGAAAGAGCACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGCACCGTACGATATTGGGCATGTATCAATTTCTCACGAAGTGTCCAAGAAAGTACAGCTCGTGGATTTTGCCAACAATTAGTTCAGATGTGCCAAATATCAGGCATGGAATTTAGCCAGGACCCTGTGATTCCTATATATTCAGCAAAACCTGATCTGGTAAAGAAGGCCTTGAAGTATGTACATTCTGCTGACAAACTAGGTGGGAAAGAGCTAGAGTTGCTGATTGCCATTCTTCCAGATAACAATGGCTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATTTGGGGTTGATTTCTCAATGCTGTCTTACAAAACACGTATTCAAGATTAATAGACAGTATTTGGCAAATGTGGCACTAAAGATCAATGTCAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCTCTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTATGCAGGATTGGTGTGTGCTCAGCCTCATCGCGAAGAACTCATTCAAGATCTTTTCAAATGTTGGAAGGATCCTCATCATGGTATAGTGTATGGTGGCATGATCAGAGAGCTCTTACTCTCATTCAAAAAGGCAACCGGACAAAAACCATTGAGGATAATTTTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCCATCCGTAAGGCTTGTGCATCTTTGGAAACTAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAGCGGCACCACACTAGGCTCTTCTCAAACAATCATGACGACAGAAACAGTACTGATAAGAGCGGGAATATTTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCTACTGAATTCGACTTCTATTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACATTATCATGTTCTATGGGACGAGAACAATTTCACTGCAGATGAGATTCAGTCTTTGACTAACAACTTATGCTACACCTATGCAAGATGTACACGATCTGTTTCTGTTGTGCCTCCTGCGTACTATGCTCATCTAGCAGCTTACAGAGCTCGTTTCTACGTGGAACCTGACGTACCTGAGATTGCTAAATCGCGAGGTGCAAGATCAAAAGATGAGTCTGTTCGGCCACTACCAGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 2724 0.4233 MKDPVEDQVKSNSRVLQKSTNLRRKGTRRSQCKSDKLQDTILDSELGSSASCKSLVFPTRPGYGQVGTKCLVKANHFLADISASNLSHYSVKITPEVTFRKTSKAIVAELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFAYKEFTIILREYDEGTGSTREREFEVAIRFAARVSMHQLRQLLSGKQVDTPQEALSVIDIVLRELAAQSYVSIGRFLYSPDLRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVQSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRISGLTSQPTRELNFPLDDKMNMKSVVDYFQEVYGYTIIYSHLPCLQVGSQKKVNYLPLEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQIIQQSDYECNPYAKEFGISIDSKLASVEARVLPAPWLKYHDTGREKEHLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPIYSAKPDLVKKALKYVHSADKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLETSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDVPEIAKSRGARSKDESVRPLPALKEKVKNVMFYC 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00009 907 Pfam Argonaute linker 1 domain 212 261 IPR014811 -
Gabi4455g00009 907 Pfam PAZ domain 268 394 IPR003100 GO:0005515
Gabi4455g00009 907 SMART PAZ_2_a_3 268 400 IPR003100 GO:0005515
Gabi4455g00009 907 Pfam Mid domain of argonaute 461 538 IPR032473 -
Gabi4455g00009 907 Gene3D - 442 613 - -
Gabi4455g00009 907 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4455g00009 907 SUPERFAMILY Ribonuclease H-like 538 872 IPR012337 -
Gabi4455g00009 907 CDD Piwi_ago-like 422 869 IPR045246 -
Gabi4455g00009 907 Pfam Piwi domain 551 869 IPR003165 GO:0003676
Gabi4455g00009 907 CDD PAZ_argonaute_like 263 377 - -
Gabi4455g00009 907 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 56 872 - -
Gabi4455g00009 907 Pfam Argonaute linker 2 domain 406 450 IPR032472 -
Gabi4455g00009 907 FunFam Argonaute 10 442 613 - -
Gabi4455g00009 907 Pfam N-terminal domain of argonaute 69 202 IPR032474 -
Gabi4455g00009 907 SMART Piwi_a_2 550 871 IPR003165 GO:0003676
Gabi4455g00009 907 Gene3D paz domain 258 382 - -
Gabi4455g00009 907 SUPERFAMILY PAZ domain 259 418 IPR036085 GO:0005515
Gabi4455g00009 907 Gene3D - 619 907 IPR036397 GO:0003676
Gabi4455g00009 907 ProSiteProfiles PAZ domain profile. 264 378 IPR003100 GO:0005515
Gabi4455g00009 907 FunFam Protein argonaute-2 257 383 - -
Gabi4455g00009 907 ProSiteProfiles Piwi domain profile. 550 871 IPR003165 GO:0003676
Gabi4455g00009 907 SMART DUF1785_2 211 263 IPR014811 -
Gabi4455g00009 907 FunFam protein argonaute 10-like 619 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00009 Gabi-Chr4455 120949 127646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00009 57 907 Eukaryotic Initiation Factors Gene Family AT5G43810 73.868 0.0 1370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00009 K11593 - gmx:100798086 1689.86