Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01257 ATGCTTGCCCTCCCACCTCCACCTCCACCTCCACCCCTAGCCACAAGGATATCCAAACAAGTCTCTCCAAACCAAACTGTCATATCAAAAGATTCAAAAAAACAAACCATAAAACAACATTCTCAAGAATCAAATGCACCAAATTATGTTACACCAAACTCAATTAGGCCGCCACCACCAACAACAACACCAAGACTAAGGCAACCTCAATTTCAAAGGACCAATCCAATCACATGGTTTGCTGCAGTACTGTGCCTCGTATTCAGCCTTGTTCTCATCTTCTTTGGAGTAGCAACTTTGATCATCTTCCTAGGCCTCAAGCCTAGAAACCCCACGTTTGACATTCCCAATGCAAACCTCAATGCAGTCTACTTTGACTCACCACAATACTTCAATGGGGACTTCATCCTCCTTGCAAACATCACCAACCCCAACAGGAGAATTGATGTGAGGTTTGAGTCTTTGGATGTTGACCTTTTCTTCTCAGACAGGATCATATCAACACAATCAATTCAACCCTTCACTCAGAGGAGAAGGGAAAGCAGATGCCAGATGGAGATGACTGCTCCACCAACCGGTGTATTGGTGGCTAGGAATTGCATCACAAAGAGATGA 615 0.4423 MLALPPPPPPPPLATRISKQVSPNQTVISKDSKKQTIKQHSQESNAPNYVTPNSIRPPPPTTTPRLRQPQFQRTNPITWFAAVLCLVFSLVLIFFGVATLIIFLGLKPRNPTFDIPNANLNAVYFDSPQYFNGDFILLANITNPNRRIDVRFESLDVDLFFSDRIISTQSIQPFTQRRRESRCQMEMTAPPTGVLVARNCITKR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01257 204 MobiDBLite consensus disorder prediction 1 16 - -
Cca09g01257 204 MobiDBLite consensus disorder prediction 17 32 - -
Cca09g01257 204 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 181 204 - -
Cca09g01257 204 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 46 182 - -
Cca09g01257 204 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 181 204 - -
Cca09g01257 204 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 46 182 - -
Cca09g01257 204 Pfam Late embryogenesis abundant protein 140 186 IPR004864 -
Cca09g01257 204 MobiDBLite consensus disorder prediction 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01257 Cca-Chr9 34980047 34980829 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01257 - - ccaj:109804676 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01257 09 34980047 34980829 Cca05g02052 05 40283119 40284237 PCT