Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1699 . . . Aed5g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac11g02188 Phco9g01833 . Psa4g3115 . . . . . . . . . . . . . . Vivi7g00766 .
Pvu11g1700 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01834 . . . . . . . . . . . . . . . . . .
Pvu11g1701 . . . Aed5g1188 . . . . . . . Apr5g0129 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vivi7g00763 .
Pvu11g1702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1704 . . . Aed5g1187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vivi7g00762 .
Pvu11g1705 . . . Aed4g1152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1706 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra2g1194
Pvu11g1707 . Accr1g02699 . Aed5g1186 . . . . . . . Apr5g0128 . . Bisa02g2169 . . . . . . Glsi04g2206 Gma12g01530 . Gso12g1355 . . . . . . . . . . . . . . . . . . . . . Prci6g2845 . . . . . . . Sto4g0797 . . . . . Vimu5g00642 . . Vra2g1193
   
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Select Species Gene Chromosome Start End Strand
Aed Aed4g1152 Chr4 11029054 11031047 -
Pvu Pvu11g1698 Chr11 43034557 43036084 +
Pvu Pvu11g1699 Chr11 43075590 43076177 -
Aed Aed5g1190 Chr5 10507663 10510094 +
Phac Phac11g02188 Chr11 32792591 32795253 +
Phco Phco9g01833 Chr9 42679886 42682332 -
Psa Psa4g3115 Chr4 255017169 255017957 +
Vivi Vivi7g00766 Chr7 44319226 44320030 -
Pvu Pvu11g1700 Chr11 43082293 43084486 -
Phco Phco9g01834 Chr9 42689163 42690864 -
Pvu Pvu11g1701 Chr11 43115802 43117283 +
Aed Aed5g1188 Chr5 10453826 10455869 -
Apr Apr5g0129 Chr5 1152973 1154916 -
Vivi Vivi7g00763 Chr7 44188821 44190797 -
Pvu Pvu11g1702 Chr11 43128850 43129986 +
Pvu Pvu11g1703 Chr11 43151323 43152768 +
Pvu Pvu11g1704 Chr11 43167787 43168451 +
Aed Aed5g1187 Chr5 10425759 10427974 +
Vivi Vivi7g00762 Chr7 44168431 44170314 -
Pvu Pvu11g1705 Chr11 43207397 43208440 +
Aed Aed4g1152 Chr4 11029054 11031047 -
Pvu Pvu11g1706 Chr11 43210633 43213480 -
Vra Vra2g1194 Chr2 16146165 16146691 +
Pvu Pvu11g1707 Chr11 43216203 43226680 -
Accr Accr1g02699 Chr1 63531169 63531570 -
Aed Aed5g1186 Chr5 10387382 10398964 +
Apr Apr5g0128 Chr5 1140482 1150638 +
Bisa Bisa02g2169 Chr02 50235699 50236124 -
Glsi Glsi04g2206 Chr04 74414246 74414665 -
Gma Gma12g01530 Chr12 34057144 34074430 -
Gso Gso12g1355 Chr12 35025861 35043443 -
Prci Prci6g2845 Chr6 41264695 41265465 -
Sto Sto4g0797 Chr4 5850705 5854685 +
Vimu Vimu5g00642 Chr5 7555759 7562407 -
Vra Vra2g1193 Chr2 16102336 16137375 +