Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1688 . . Adu03g01804 Aed5g1200 Aev04g2420 . Ahy13g1925 Aip03g02142 . . Amo03g0011 Apr5g0134 . . . . . . . . . . Gma12g01518 . . . . . . . . . . . . . . . . . . . . . . Phco9g01821 . . . . . . . . . Tpr7g2048 . Tsu08g02109 . . . . . .
Pvu11g1689 . . Adu03g01803 Aed5g1199 . . Ahy13g1924 Aip03g02141 . . . Apr5g0132 . . . . . . . . . . Gma12g01522 . . . . . . . . . . . . . . . . . . . . . . Phco9g01822 . . . . . . . . . . . . . . Vimu5g00635 . . .
Pvu11g1690 . . . Aed5g1198 . . . . . . . Apr5g0131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01823 . . . . . . . . . Tpr7g2050 . Tsu08g02112 . . . . . Vra2g1198
Pvu11g1691 . . Adu03g01800 Aed5g1197 Aev04g2418 . Ahy13g1915 Aip03g02136 . . Amo03g0004 Apr5g0130 . . . . . . . . . . . . . . . . . . . . . Lasa4g01431 . . . . . . . . . . . Phco9g01824 . . . . . . . . . Tpr7g2051 . Tsu08g02113 . . Vimu5g00638 . . Vra2g1195
Pvu11g1692 . . . Aed5g1196 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac11g02192 . . Psa4g3110 . . . . . . . . . . . . . . . .
Pvu11g1693 . . . Aed5g1195 . . . . . . . . . . . . . . . . . . Gma12g01527 . . . . . . . . . . . . . . . . . . . . . . . . Psa4g3113 . . . . . . . . . . . . . . Vivi7g00770 .
Pvu11g1694 . . . Aed5g1193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa4g3114 . . . . . . . . . . . . . . Vivi7g00768 .
Pvu11g1695 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1696 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g00639 . . .
Pvu11g1697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vra Vra2g1198 Chr2 16242365 16247110 -
Pvu Pvu11g1688 Chr11 42694416 42697467 +
Adu Adu03g01804 Chr03 30965685 30968388 -
Aed Aed5g1200 Chr5 10647314 10650341 -
Aev Aev04g2420 Chr04 23675576 23678307 +
Ahy Ahy13g1925 Chr13 33012743 33015452 -
Aip Aip03g02142 Chr03 31787355 31790088 -
Amo Amo03g0011 Chr03 294137 296472 -
Apr Apr5g0134 Chr5 1187526 1189110 -
Gma Gma12g01518 Chr12 33238153 33240868 +
Phco Phco9g01821 Chr9 42462893 42465581 +
Tpr Tpr7g2048 Chr7 25541104 25543550 -
Tsu Tsu08g02109 Chr08 28370390 28373287 -
Pvu Pvu11g1689 Chr11 42720583 42721619 +
Adu Adu03g01803 Chr03 30949836 30950632 -
Aed Aed5g1199 Chr5 10642057 10642626 -
Ahy Ahy13g1924 Chr13 33000766 33002052 -
Aip Aip03g02141 Chr03 31776075 31776871 -
Apr Apr5g0132 Chr5 1177810 1179075 -
Gma Gma12g01522 Chr12 33403982 33405219 +
Phco Phco9g01822 Chr9 42485292 42485870 +
Vimu Vimu5g00635 Chr5 7473636 7474217 -
Pvu Pvu11g1690 Chr11 42735592 42746158 -
Aed Aed5g1198 Chr5 10624742 10627496 -
Apr Apr5g0131 Chr5 1167594 1171570 -
Phco Phco9g01823 Chr9 42500099 42509200 -
Tpr Tpr7g2050 Chr7 25577584 25580722 +
Tsu Tsu08g02112 Chr08 28474127 28477469 +
Vra Vra2g1198 Chr2 16242365 16247110 -
Pvu Pvu11g1691 Chr11 42751094 42758210 +
Adu Adu03g01800 Chr03 30822336 30827359 -
Aed Aed5g1197 Chr5 10602405 10606836 -
Aev Aev04g2418 Chr04 23645503 23658926 -
Ahy Ahy13g1915 Chr13 32721334 32726225 -
Aip Aip03g02136 Chr03 31505339 31509989 -
Amo Amo03g0004 Chr03 178376 183419 -
Apr Apr5g0130 Chr5 1159983 1165393 +
Lasa Lasa4g01431 Chr4 155806075 155845945 +
Phco Phco9g01824 Chr9 42519633 42537602 +
Tpr Tpr7g2051 Chr7 25586495 25592583 -
Tsu Tsu08g02113 Chr08 28496601 28502124 -
Vimu Vimu5g00638 Chr5 7487372 7495542 +
Vra Vra2g1195 Chr2 16190803 16203576 -
Pvu Pvu11g1692 Chr11 42785814 42786929 +
Aed Aed5g1196 Chr5 10599516 10601439 +
Phac Phac11g02192 Chr11 32901535 32903219 +
Psa Psa4g3110 Chr4 254791448 254798243 +
Pvu Pvu11g1693 Chr11 42881847 42883019 +
Aed Aed5g1195 Chr5 10575333 10576825 +
Gma Gma12g01527 Chr12 33818599 33820368 +
Psa Psa4g3113 Chr4 254996284 254997275 +
Vivi Vivi7g00770 Chr7 44533904 44540665 -
Pvu Pvu11g1694 Chr11 42943276 42946852 -
Aed Aed5g1193 Chr5 10533878 10537454 -
Psa Psa4g3114 Chr4 255000549 255000998 +
Vivi Vivi7g00768 Chr7 44429757 44432597 -
Pvu Pvu11g1695 Chr11 42963059 42963943 -
Pvu Pvu11g1696 Chr11 42965723 42966043 -
Vimu Vimu5g00639 Chr5 7502204 7502515 -
Pvu Pvu11g1697 Chr11 42975060 42976343 +