Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01808 . . . . . . . . . . . . . . . . . .
Pvu11g1680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra2g1225
Pvu11g1681 . . . . . . Ahy3g1589 . . . . . Arst3g02298 . . Bva07g01659 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst11g00537 . . . . . . . Vimu5g00600 . . Vra2g1224
Pvu11g1682 . . . . Aev04g2427 . . . . Amo13g2342 Amo03g0124 . Arst3g02297 . . Bva07g01658 . . . Dod03g1836 . . . . . . Lal1g0603 . . . . Lan13g0603 . . . . . . . Mal5g2299 . . . . . . . . . . . . . . . . . Tsu08g01754 . . Vimu5g00601 . . Vra2g1223
Pvu11g1683 . . . . Aev10g1295 . . . . . . . Arst3g02295 Bach9g00811 . Bva07g01657 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g1705 . . . . . . Vimu5g00603 . . Vra2g1222
Pvu11g1684 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1685 Acco08g1162 Accr13g01114 . . Aev10g1294 . . . Alju10g1136 . . Apr5g0766 Arst3g02290 Bach9g00812 Bisa02g2854 Bva07g01656 . . Dere07g1269 . . Glsi04g1265 . Gma06g02087 . Gso6g1931 . Lal2g0633 . . . . . . Lele29g0830 Lele30g0569 . Lele32g0809 . . . . Mibi07g1100 . . . Prci6g1349 . . . . . . . Sto4g2782 . . . . . Vimu5g00604 . Vivi7g00471 Vra2g1221
Pvu11g1686 . . . . . . . . . . . . Arst7g03041 . . . . . . . . . . . . . . . Lal9g0550 . Lan8g1349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g00605 . . Vra2g1219
Pvu11g1687 . . . Aed5g1265 . . . . . . . Apr5g0162 . . . . Car07g02235 Cca04g01502 . . . . . . . . . . . Lan7g0623 Lan8g1348 . Lapu5g01085 . . . . . Lja3g4878 . . . . . . . . . Pste1g04063 Pumo11g00556 Rops3g02066 Seca4g08199 . . . . . . . . Vimu5g00607 Viun11g00780 . Vra2g1217
   
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Select Species Gene Chromosome Start End Strand
Aev Aev10g1294 Chr10 16508175 16510003 -
Arst Arst7g03041 Chr7 76523055 76525321 -
Pvu Pvu11g1678 Chr11 42539362 42539673 +
Pvu Pvu11g1679 Chr11 42545275 42547561 +
Phco Phco9g01808 Chr9 42165841 42168050 -
Pvu Pvu11g1680 Chr11 42554223 42560391 +
Vra Vra2g1225 Chr2 17163160 17171669 -
Pvu Pvu11g1681 Chr11 42570785 42572596 -
Ahy Ahy3g1589 Chr3 29385493 29387578 +
Arst Arst3g02298 Chr3 29609550 29611497 +
Bva Bva07g01659 Chr07 15728731 15729602 +
Spst Spst11g00537 Chr11 27314997 27316808 -
Vimu Vimu5g00600 Chr5 6565807 6567618 -
Vra Vra2g1224 Chr2 17146657 17148764 +
Pvu Pvu11g1682 Chr11 42599883 42605813 -
Aev Aev04g2427 Chr04 23818148 23835810 -
Amo Amo13g2342 Chr13 40413082 40420072 +
Amo Amo03g0124 Chr03 2292696 2299369 -
Arst Arst3g02297 Chr3 29580286 29586990 +
Bva Bva07g01658 Chr07 15724416 15728255 +
Dod Dod03g1836 Chr03 31187572 31206529 -
Lal Lal1g0603 Chr1 3858354 3863853 +
Lan Lan13g0603 Chr13 4897749 4903020 +
Mal Mal5g2299 Chr5 59470967 59473921 -
Tsu Tsu08g01754 Chr08 21302848 21311992 +
Vimu Vimu5g00601 Chr5 6586678 6598741 -
Vra Vra2g1223 Chr2 17119258 17125321 +
Pvu Pvu11g1683 Chr11 42617474 42624499 -
Aev Aev10g1295 Chr10 16511338 16514118 +
Arst Arst3g02295 Chr3 29570015 29575206 +
Bach Bach9g00811 Chr9 5716265 5720355 -
Bva Bva07g01657 Chr07 15719583 15724167 +
Ssu Ssu3g1705 Chr3 51604242 51612591 -
Vimu Vimu5g00603 Chr5 6607593 6615798 -
Vra Vra2g1222 Chr2 17095084 17104274 +
Pvu Pvu11g1684 Chr11 42635232 42636598 +
Pvu Pvu11g1685 Chr11 42647451 42649755 +
Acco Acco08g1162 Chr08 11996301 12000771 +
Accr Accr13g01114 Chr13 13906875 13911233 +
Aev Aev10g1294 Chr10 16508175 16510003 -
Alju Alju10g1136 Chr10 11523297 11524835 +
Apr Apr5g0766 Chr5 10825308 10826628 +
Arst Arst3g02290 Chr3 29356042 29360391 -
Bach Bach9g00812 Chr9 5720733 5723777 +
Bisa Bisa02g2854 Chr02 72239641 72241631 -
Bva Bva07g01656 Chr07 15716514 15719426 -
Dere Dere07g1269 Chr07 16384229 16387263 +
Glsi Glsi04g1265 Chr04 13088200 13090958 +
Gma Gma06g02087 Chr06 35078607 35081202 +
Gso Gso6g1931 Chr6 31469174 31472267 +
Lal Lal2g0633 Chr2 3769393 3776862 -
Lele Lele29g0830 Chr29 5555748 5558763 +
Lele Lele30g0569 Chr30 10476505 10480405 -
Lele Lele32g0809 Chr32 5374182 5378060 +
Mibi Mibi07g1100 Chr07 15354878 15358841 +
Prci Prci6g1349 Chr6 9872446 9876361 +
Sto Sto4g2782 Chr4 28705252 28708301 -
Vimu Vimu5g00604 Chr5 6626229 6629019 +
Vivi Vivi7g00471 Chr7 27309188 27312711 +
Vra Vra2g1221 Chr2 17079773 17082277 -
Pvu Pvu11g1686 Chr11 42657236 42659581 -
Arst Arst7g03041 Chr7 76523055 76525321 -
Lal Lal9g0550 Chr9 3726320 3727948 -
Lan Lan8g1349 Chr8 20301038 20302369 +
Vimu Vimu5g00605 Chr5 6653043 6655221 -
Vra Vra2g1219 Chr2 17064199 17066782 +
Pvu Pvu11g1687 Chr11 42677706 42680340 -
Aed Aed5g1265 Chr5 11760040 11763643 +
Apr Apr5g0162 Chr5 1429603 1430166 +
Car Car07g02235 Chr07 32668473 32671760 -
Cca Cca04g01502 Chr04 21397804 21400264 +
Lan Lan7g0623 Chr7 4905158 4909014 -
Lan Lan8g1348 Chr8 20294884 20295533 +
Lapu Lapu5g01085 Chr5 21971489 21973797 -
Lja Lja3g4878 Chr3 90853336 90855823 +
Pste Pste1g04063 Chr1 23091179 23093613 +
Pumo Pumo11g00556 Chr11 19665215 19665954 -
Rops Rops3g02066 Chr3 38807079 38809327 +
Seca Seca4g08199 Chr4 194526863 194527396 +
Vimu Vimu5g00607 Chr5 6697169 6697765 -
Viun Viun11g00780 Chr11 10702102 10704425 -
Vra Vra2g1217 Chr2 17006335 17008858 +