Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1668 . . Adu03g01799 . . . Ahy13g1914 Aip03g02135 . . . . . . . . . . . . . . . . . . . . . . . . . Lasa4g01430 . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g00591 . . Vra2g1227
Pvu11g1669 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g2382 . . . . . . . . . . . . . . . . . . . . . . . . Vra2g1226
Pvu11g1670 . . . . Aev10g1077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1671 . . . . Aev10g1076 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g00596 . . .
Pvu11g1672 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1674 . . . . Aev10g1074 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01801 . . . . . . . . . . . . . . . . . .
Pvu11g1675 . . . . Aev10g1072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01804 . . . . . . . . . . . . . . . . . Vra2g1379
Pvu11g1676 . . . . Aev10g1070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01806 . . . . . . . . . Tpr7g1482 . . . . . . . .
Pvu11g1677 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01807 . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vra Vra2g1379 Chr2 22093415 22097431 +
Pvu Pvu11g1668 Chr11 42350632 42354197 +
Adu Adu03g01799 Chr03 30785742 30788207 -
Ahy Ahy13g1914 Chr13 32676346 32678808 -
Aip Aip03g02135 Chr03 31464111 31466653 -
Lasa Lasa4g01430 Chr4 155404280 155406282 +
Vimu Vimu5g00591 Chr5 6418847 6433882 +
Vra Vra2g1227 Chr2 17189252 17210904 -
Pvu Pvu11g1669 Chr11 42356831 42360895 +
Lja Lja3g2382 Chr3 29046239 29050653 +
Vra Vra2g1226 Chr2 17180916 17185067 -
Pvu Pvu11g1670 Chr11 42417760 42422872 +
Aev Aev10g1077 Chr10 14485648 14491984 +
Pvu Pvu11g1671 Chr11 42455014 42458799 +
Aev Aev10g1076 Chr10 14475635 14481638 +
Vimu Vimu5g00596 Chr5 6528652 6531314 +
Pvu Pvu11g1672 Chr11 42463160 42463550 -
Pvu Pvu11g1673 Chr11 42465378 42466295 -
Pvu Pvu11g1674 Chr11 42481087 42482303 +
Aev Aev10g1074 Chr10 14462044 14467203 +
Phco Phco9g01801 Chr9 42118685 42121069 -
Pvu Pvu11g1675 Chr11 42492422 42493453 +
Aev Aev10g1072 Chr10 14451764 14455641 +
Phco Phco9g01804 Chr9 42134721 42136975 -
Vra Vra2g1379 Chr2 22093415 22097431 +
Pvu Pvu11g1676 Chr11 42496849 42497559 +
Aev Aev10g1070 Chr10 14435604 14441386 +
Phco Phco9g01806 Chr9 42154132 42154949 -
Tpr Tpr7g1482 Chr7 16456348 16459896 -
Pvu Pvu11g1677 Chr11 42523367 42526188 +
Phco Phco9g01807 Chr9 42155438 42158065 -