Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1578 . . Adu03g01649 . . . . . . . . Apr5g0048 . . . . . . . Dod03g1909 . . . . . Gso6g2152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g2001 . . . . . . . .
Pvu11g1579 . . . . . . . . . . . Apr5g0049 . . . . . . . Dod03g1907 . . . . . Gso6g2151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1580 . . . . . . . . . . . Apr5g0050 . . . . . . . . . . . . . Gso6g2150 . . . . . . . . . . . . . . . . . Mtr4g2619 . . . . . . . . . . . . . . . . . . . .
Pvu11g1581 . . . . . . . . . . . Apr5g0051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g1994 . . . . . . . .
Pvu11g1582 . . . Aed5g1268 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01714 . . . . . . . Ssu3g1919 . . . . . . . . . .
Pvu11g1583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1584 . . . . . . . . . . . Apr5g0053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g1993 . Tsu08g01990 . . . . . Vra2g1316
Pvu11g1585 . . . . . . . . . . . . . . . . . . . . . . . . . Gso6g2131 . . . . . . . . . . . . . . . . . . . Phco9g01716 . . . . . . . Ssu3g1916 . Tpr7g1992 . . . . . . . .
Pvu11g1586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01717 . . . . . . . Ssu3g1915 . . . . . . Vimu5g00370 . . .
Pvu11g1587 . . . . . . . . . . . . . . . . Car07g02138 . . . . . . . . . . . . . . . . Lasa4g01594 . . . . . . . . . . . Phco9g01718 . . . . . . . . . Tpr7g1991 . . . . Vimu5g00371 . . .
   
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Select Species Gene Chromosome Start End Strand
Tpr Tpr7g1993 Chr7 24456065 24459674 -
Pvu Pvu11g1578 Chr11 39872170 39876489 -
Adu Adu03g01649 Chr03 27086439 27090579 -
Apr Apr5g0048 Chr5 453213 457765 -
Dod Dod03g1909 Chr03 41094931 41098736 +
Gso Gso6g2152 Chr6 41190412 41195385 -
Tpr Tpr7g2001 Chr7 24533845 24537767 +
Pvu Pvu11g1579 Chr11 39893899 39897526 +
Apr Apr5g0049 Chr5 461122 465222 -
Dod Dod03g1907 Chr03 40997473 41002067 +
Gso Gso6g2151 Chr6 41169738 41173151 +
Pvu Pvu11g1580 Chr11 39921004 39924543 +
Apr Apr5g0050 Chr5 468559 472334 -
Gso Gso6g2150 Chr6 41120286 41126274 +
Mtr Mtr4g2619 Chr4 39686596 39690228 +
Pvu Pvu11g1581 Chr11 39932310 39935581 +
Apr Apr5g0051 Chr5 475899 479227 +
Tpr Tpr7g1994 Chr7 24463746 24466985 -
Pvu Pvu11g1582 Chr11 39964282 39965600 -
Aed Aed5g1268 Chr5 11790682 11791730 +
Phco Phco9g01714 Chr9 40402496 40403583 -
Ssu Ssu3g1919 Chr3 60328832 60330545 +
Pvu Pvu11g1583 Chr11 39994608 39994823 +
Pvu Pvu11g1584 Chr11 39998050 40001560 +
Apr Apr5g0053 Chr5 481591 485384 -
Tpr Tpr7g1993 Chr7 24456065 24459674 -
Tsu Tsu08g01990 Chr08 26003834 26017567 -
Vra Vra2g1316 Chr2 20964194 20969322 +
Pvu Pvu11g1585 Chr11 40025614 40026315 +
Gso Gso6g2131 Chr6 40577042 40579050 +
Phco Phco9g01716 Chr9 40459892 40461814 +
Ssu Ssu3g1916 Chr3 60287718 60291358 +
Tpr Tpr7g1992 Chr7 24447275 24450129 -
Pvu Pvu11g1586 Chr11 40043282 40045995 +
Phco Phco9g01717 Chr9 40473448 40476214 +
Ssu Ssu3g1915 Chr3 60265138 60267116 +
Vimu Vimu5g00370 Chr5 3340755 3341485 +
Pvu Pvu11g1587 Chr11 40049833 40053912 -
Car Car07g02138 Chr07 27793343 27798700 -
Lasa Lasa4g01594 Chr4 253418123 253421423 -
Phco Phco9g01718 Chr9 40480986 40484207 -
Tpr Tpr7g1991 Chr7 24406200 24410507 +
Vimu Vimu5g00371 Chr5 3346356 3349543 -
Vra Vra2g1316 Chr2 20964194 20969322 +