Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu08g01981 . . . . . .
Pvu11g1569 . . . . . . . . . . . . . . . . Car07g02137 . . Dod03g1910 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g1995 . . . . . . . .
Pvu11g1570 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1573 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1574 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1575 . . Adu03g01638 . Aev04g2455 . . . . . . Apr5g0045 . . . . . . . . . . . . . Gso6g2155 . . . . . . . . . . . . . . . . . Mtr4g2618 . . . . . . . . . . . . . . . . . . . .
Pvu11g1576 . . . . . . . . . . . . . . . . . . . . . . . Gma06g02343 . . . . . . . . . . . . . . . Mal5g2413 . . . . . . . . . . . . . . . Tpr7g1999 . . . . . . . .
Pvu11g1577 . . . . . . . . . . . Apr5g0150 . . . . . . . . . . . . . Gso6g2153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Tpr Tpr7g1999 Chr7 24516214 24520403 -
Pvu Pvu11g1568 Chr11 39644596 39646501 +
Tsu Tsu08g01981 Chr08 25808368 25809750 -
Pvu Pvu11g1569 Chr11 39691491 39693331 +
Car Car07g02137 Chr07 27662578 27664508 +
Dod Dod03g1910 Chr03 41134504 41136763 +
Tpr Tpr7g1995 Chr7 24484172 24485907 +
Pvu Pvu11g1570 Chr11 39723136 39726704 -
Pvu Pvu11g1571 Chr11 39734272 39747901 +
Pvu Pvu11g1572 Chr11 39751562 39752023 +
Pvu Pvu11g1573 Chr11 39767506 39769438 +
Pvu Pvu11g1574 Chr11 39774775 39777399 -
Pvu Pvu11g1575 Chr11 39788702 39792190 +
Adu Adu03g01638 Chr03 26824891 26838802 +
Aev Aev04g2455 Chr04 24136438 24138372 -
Apr Apr5g0045 Chr5 434429 438052 -
Gso Gso6g2155 Chr6 41271327 41278089 -
Mtr Mtr4g2618 Chr4 39678338 39682352 +
Pvu Pvu11g1576 Chr11 39824910 39827974 -
Gma Gma06g02343 Chr06 44556065 44560108 +
Mal Mal5g2413 Chr5 66089956 66093010 +
Tpr Tpr7g1999 Chr7 24516214 24520403 -
Pvu Pvu11g1577 Chr11 39856252 39859644 -
Apr Apr5g0150 Chr5 1309550 1316177 +
Gso Gso6g2153 Chr6 41244214 41250260 +